PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G061408_P01
Common NameLOC100193434, ZEAMMB73_075099
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family WRKY
Protein Properties Length: 324aa    MW: 34355.2 Da    PI: 6.7921
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G061408_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY81.11.2e-25138199159
                        ---SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
               WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                        +dDg +WrKYGqKe+ g+++pr+YYrC+++   gC+++k+v+r++edp++ +++Y+geH++ 
  GRMZM2G061408_P01 138 VDDGRSWRKYGQKEILGAKHPRGYYRCSHRysqGCQATKQVQRTDEDPTLYDVIYHGEHTCA 199
                        58***************************99999*************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.809.7E-28125199IPR003657WRKY domain
PROSITE profilePS5081121.953133196IPR003657WRKY domain
SuperFamilySSF1182901.44E-24136199IPR003657WRKY domain
SMARTSM007747.5E-38138200IPR003657WRKY domain
PfamPF031063.0E-25139198IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000037anatomyshoot apex
PO:0006340anatomyadult vascular leaf
PO:0006505anatomycentral spike of ear inflorescence
PO:0009009anatomyplant embryo
PO:0009025anatomyvascular leaf
PO:0020040anatomyleaf base
PO:0020104anatomyleaf sheath
PO:0001052developmental stagevascular leaf expansion stage
PO:0001095developmental stageplant embryo true leaf formation stage
PO:0007006developmental stageIL.00 inflorescence just visible stage
PO:0007031developmental stagemid whole plant fruit ripening stage
PO:0007063developmental stageLP.07 seven leaves visible stage
PO:0007072developmental stageLP.18 eighteen leaves visible stage
PO:0007101developmental stageLP.09 nine leaves visible stage
Sequence ? help Back to Top
Protein Sequence    Length: 324 aa     Download sequence    Send to blast
MATTETMEMG MGVVVDGVSS NGSGGCGGLV VTELSHIKEL VRQLEVHLGG SPDLCKHLAS  60
QIFSLTERSI GLITSSSSSS GLDGARRKRS AGDAGLASPL SATPTSGVTD GPFKNTKKRK  120
AMEQRRQRVS SAGGENPVDD GRSWRKYGQK EILGAKHPRG YYRCSHRYSQ GCQATKQVQR  180
TDEDPTLYDV IYHGEHTCAP HRPAAAEHNP DARGHLQTLS AGLTVKTEGL PDPPRGRGAA  240
TPLYLSASST PPSTSENWGV SPATSGSTHV ASFRPFEAAE WRGQAEHQEV VSALVAAIAP  300
PPAVDSLDDL LIDIDLDDIA SFFA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A1e-24138198868OsWRKY45
Search in ModeBase
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G061408
Function -- GeneRIF ? help Back to Top
  1. Maize terpenoid phytoalexin biosynthesis is regulated by the common transcription factor ZmWRKY79, which plays a broad role as a potential master regulator in stress response through involvement in phytohormone metabolism or signaling and ROS scavenging.
    [PMID: 29281032]
  2. The protein is localized in the nucleus. Expression of mRNA is up-regulated by treatment biotic and abiotic stresses and phytohormone treatment.
    [PMID: 29281032]
  3. The transient overexpression had no effect upon expression of Gene:100281196, Gene:542352, Gene:542720, Gene:542258, and Gene:732819.
    [PMID: 29281032]
  4. Transient overexpression of WRKY79 in protoplasts results in up-regulation of Gene:542165, Gene:541974, Gene:100274033, Gene:542688, Gene:542150, Gene:542151, Gene:100273457, Gene:100285509, Gene:103626248, Gene:103646045, Gene:100217270, Gene:100279981, Gene:100281950, Gene:542476, Gene:542369, Gene:100281950, and Gene:542260.
    [PMID: 29281032]
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G061408_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0356970.0BT035697.1 Zea mays full-length cDNA clone ZM_BFb0078F13 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001132026.20.0uncharacterized protein LOC100193434
TrEMBLK7UVX80.0K7UVX8_MAIZE; Putative WRKY transcription factor 30
STRINGGRMZM2G025895_P010.0(Zea mays)
STRINGGRMZM2G061408_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP108638131
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G23810.12e-32WRKY family protein
Publications ? help Back to Top
  1. Fu J, et al.
    ZmWRKY79 positively regulates maize phytoalexin biosynthetic gene expression and is involved in stress response.
    J. Exp. Bot., 2018. 69(3): p. 497-510
    [PMID:29281032]