PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G056407_P01
Common NameMYB94, Zm.19199
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family MYB
Protein Properties Length: 330aa    MW: 34911 Da    PI: 7.9238
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G056407_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.13.5e-171461148
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
    Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                       +g+WT+eEd+ lv +++++G+g+W++++++ g+ R+ k+c++rw +yl
  GRMZM2G056407_P01 14 KGPWTPEEDLVLVSYIQEHGPGNWRAVPARTGLMRCSKSCRLRWTNYL 61
                       79********************************************97 PP
2Myb_DNA-binding52.41.2e-1667112148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
    Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                        rg++T++E++l+v++ ++lG++ W++Ia++++  Rt++++k++w+++l
  GRMZM2G056407_P01  67 RGNFTEQEEKLIVHLQALLGNR-WAAIASYLP-ERTDNDIKNYWNTHL 112
                        89********************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.5E-24564IPR009057Homeodomain-like
PROSITE profilePS5129418.355961IPR017930Myb domain
SuperFamilySSF466893.67E-3011108IPR009057Homeodomain-like
SMARTSM007173.5E-131363IPR001005SANT/Myb domain
PfamPF002494.7E-161461IPR001005SANT/Myb domain
CDDcd001673.81E-111661No hitNo description
PROSITE profilePS5129425.29762116IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.5E-2465116IPR009057Homeodomain-like
SMARTSM007171.2E-1666114IPR001005SANT/Myb domain
PfamPF002491.6E-1567112IPR001005SANT/Myb domain
CDDcd001676.45E-1269112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 330 aa     Download sequence    Send to blast
MVRPPCCDKE GVKKGPWTPE EDLVLVSYIQ EHGPGNWRAV PARTGLMRCS KSCRLRWTNY  60
LRPGIKRGNF TEQEEKLIVH LQALLGNRWA AIASYLPERT DNDIKNYWNT HLKRKLQSGG  120
DGAAKPPAHR PPSSSKGQWE RRLQTDINLA RRALREALTP LDDLKPQLQR DAAADAPAAG  180
AGTGGGDSPA SSSSGASQSS PLAPAAFAAA AAGPYVLTAE NISRMLDGWA GRKVRGGGTP  240
GTPGGAESAS TGSSDASEVS YGGAAVASAA PAPACGGPVF EYEAKPGVPT SHQQMPLSAI  300
ESWLFDDDSH LHHAVQSASL LDAAPMDYPF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C6e-28141164105C-Myb DNA-Binding Domain
1msf_C6e-28141164105C-Myb DNA-Binding Domain
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.191990.0ear| meristem| shoot| silk
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G056407
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expression in flowers increases as the flowers develop. {ECO:0000269|PubMed:1840903}.
UniprotTISSUE SPECIFICITY: Expressed in flowers, leaves and weakly in seed pods. {ECO:0000269|PubMed:1840903}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G056407_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0426110.0BT042611.1 Zea mays full-length cDNA clone ZM_BFb0368F24 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001147454.10.0uncharacterized protein LOC100281063
SwissprotP813921e-96MYB06_ANTMA; Myb-related protein 306
TrEMBLB4FZS30.0B4FZS3_MAIZE; Fused leaves1
STRINGSb02g040160.10.0(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G47600.15e-90myb domain protein 94
Publications ? help Back to Top
  1. Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C
    Expression patterns of myb genes from Antirrhinum flowers.
    Plant Cell, 1991. 3(2): p. 115-25
    [PMID:1840903]