PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G055263_P01
Common NameGRAS61, LOC103634103
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family GRAS
Protein Properties Length: 564aa    MW: 59835.2 Da    PI: 4.9556
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G055263_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS309.11e-941255161373
               GRAS   1 lvelLlecAeavss..gdlelaqalLarlselaspdgd.....pmqRlaayfteALaarlarsvs..elykal..ppsetseknsseelaal 81 
                        l +lL+++Aea+s   ++ ela+ +L rl++++s  gd     +m+Rla++ft AL+  l +s +  +  k+   ++s+ +++++ ++l+a+
  GRMZM2G055263_P01 125 LLHLLMAAAEALSGpqKSRELARVILVRLKQMVSHIGDnaavsNMERLATHFTDALQGLLDGSHPvgGAGKQAaaAASHGHQQHTGDVLTAF 216
                        579*********96447788**************9998888889****************996552233333311445555556999***** PP

               GRAS  82 klfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp..egppslRiTgvgspesgskeeleetgerLakfAee 171
                        ++++++sP++kf+h+taNqaIleav+ge+rvH++D+di +G+QW++L+qa++sRp   +pp+lRiT+v++   gs+++++e g+rLa fA++
  GRMZM2G055263_P01 217 QMLQDMSPYMKFGHFTANQAILEAVAGERRVHVVDYDIAEGVQWASLMQAMTSRPdgVPPPHLRITAVSRGGGGSARAVQEAGRRLAAFAAS 308
                        *******************************************************777799*********8877****************** PP

               GRAS 172 lgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsles.erdevLklvkslsPkvvvvveqeadhnse......sFler 256
                        +g pf+f     ++ e +++ + r+ +gE+l+ n+vl+       +v  +     ++L  + +l +kvv+vve++  h ++       F++r
  GRMZM2G055263_P01 309 VGQPFSFGQCRLDSDERFRPATVRMVKGETLVANCVLNQAAAT-TTVRRPTgSVASFLAGMATLGAKVVTVVEEDQGHAEKddegagGFVAR 399
                        *********9999************************877776.444444347999*******************8885555677779**** PP

               GRAS 257 flealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdg 348
                        f+e l+ ysa+ dslea++p++s+ r  vEr++l+++i  +v+ + ++   + e  + W e+++  GF++vpls ++ +qa+lll  ++ dg
  GRMZM2G055263_P01 400 FMEELHRYSAVWDSLEAGFPTQSRVRGLVERAILAPNIAGAVSRAYRAVDGDGEARAGWGEWMRGNGFRAVPLSCFNHSQARLLLGLFN-DG 490
                        *****************************************************************************************.** PP

               GRAS 349 yrveees.gslvlgWkdrpLvsvSaW 373
                        y++ee s + +vlgWk r+L+s+S+W
  GRMZM2G055263_P01 491 YTMEETSpNKIVLGWKARRLLSASVW 516
                        ****88626777************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098550.43199497IPR005202Transcription factor GRAS
PfamPF035143.6E-92125516IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 564 aa     Download sequence    Send to blast
MEVTMDDVAG DLEFSGCSST TTSPSSPSLD DGMGMYAWNA LSPVTDWGSL CPDDGAQDLH  60
GLIESMLYDD TLLGSADLNP AMFPDDVYCC SNGSAPSSTT TTNPGTPVND GDAQKGDCHE  120
KGLRLLHLLM AAAEALSGPQ KSRELARVIL VRLKQMVSHI GDNAAVSNME RLATHFTDAL  180
QGLLDGSHPV GGAGKQAAAA ASHGHQQHTG DVLTAFQMLQ DMSPYMKFGH FTANQAILEA  240
VAGERRVHVV DYDIAEGVQW ASLMQAMTSR PDGVPPPHLR ITAVSRGGGG SARAVQEAGR  300
RLAAFAASVG QPFSFGQCRL DSDERFRPAT VRMVKGETLV ANCVLNQAAA TTTVRRPTGS  360
VASFLAGMAT LGAKVVTVVE EDQGHAEKDD EGAGGFVARF MEELHRYSAV WDSLEAGFPT  420
QSRVRGLVER AILAPNIAGA VSRAYRAVDG DGEARAGWGE WMRGNGFRAV PLSCFNHSQA  480
RLLLGLFNDG YTMEETSPNK IVLGWKARRL LSASVWAPPP VSVPSSPTEG AFQPVGMSPD  540
SGGVGRVDFD YIDSFFVEPA YALV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A8e-571075182379Protein SCARECROW
5b3h_D8e-571075182379Protein SCARECROW
Search in ModeBase
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G055263
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, shoots and leaves. {ECO:0000269|PubMed:15961668}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator essential for Nod-factor-induced gene expression. Acts downstream of calcium spiking and DMI3, a calcium/calmodulin-dependent protein kinase (CCaMK). {ECO:0000269|PubMed:15961668}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G055263_P01
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced 24 hours after treatment with Nod factor or Sinorhizobium meliloti. {ECO:0000269|PubMed:15961668}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7270190.0KJ727019.1 Zea mays clone pUT4000 GRAS transcription factor (GRAS61) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008653941.10.0nodulation-signaling pathway 2 protein
SwissprotQ5NE241e-159NSP2_MEDTR; Nodulation-signaling pathway 2 protein
TrEMBLA0A060CZR10.0A0A060CZR1_MAIZE; GRAS transcription factor (Fragment)
TrEMBLA0A317YHJ40.0A0A317YHJ4_MAIZE; Nodulation-signaling pathway 2 protein
STRINGGRMZM2G055263_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP75803148
Representative plantOGRP68391319
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08250.11e-101GRAS family protein
Publications ? help Back to Top
  1. Tang H, et al.
    An improved genome release (version Mt4.0) for the model legume Medicago truncatula.
    BMC Genomics, 2014. 15: p. 312
    [PMID:24767513]