PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G054795_P01 | ||||||||
Common Name | LOC100193442 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | YABBY | ||||||||
Protein Properties | Length: 254aa MW: 27431.2 Da PI: 6.6961 | ||||||||
Description | YABBY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | YABBY | 195.7 | 2e-60 | 23 | 219 | 7 | 170 |
YABBY 7 seqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaa.eshldeslkee........................... 70 eq+Cyv+C++C+tilav vP +slf++vtvrCGhC++ll vnl+ aa +++l +++ GRMZM2G054795_P01 23 QEQICYVHCSYCDTILAVGVPCSSLFQTVTVRCGHCSNLLYVNLRALLLPAAAaNNQLPPFGQPLlsptsphglldaeamsfqapslpgaep 114 79******************************************9988655540555544444448889999*********99999888776 PP YABBY 71 ...lleelkveeenlksnvekeesastsvssekl.......senedeevprvpp.virPPekrqrvPsaynrfikeeiqrikasnPdishre 151 + + ++++ n++++++ s+ + +e +++pr+ v+r ekrqrvPsaynrfik+eiqrikasnPdi+hre GRMZM2G054795_P01 115 psaCVSGVTSINNTCGGNTTTSSAMSS------MapppakhALQEAQQLPRTAAsVNRTSEKRQRVPSAYNRFIKDEIQRIKASNPDITHRE 200 666334444444444444333333332......2333333377788889998766************************************* PP YABBY 152 afsaaaknWahfPkihfgl 170 afsaaaknWahfP+ihfgl GRMZM2G054795_P01 201 AFSAAAKNWAHFPHIHFGL 219 *****************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04690 | 1.1E-66 | 22 | 219 | IPR006780 | YABBY protein |
SuperFamily | SSF47095 | 2.62E-7 | 163 | 212 | IPR009071 | High mobility group box domain |
Gene3D | G3DSA:1.10.30.10 | 2.8E-4 | 171 | 211 | IPR009071 | High mobility group box domain |
CDD | cd00084 | 7.52E-5 | 173 | 209 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0007275 | Biological Process | multicellular organism development |
Sequence ? help Back to Top |
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Protein Sequence Length: 254 aa Download sequence Send to blast |
MMSSAPEETL FNLDQQQPPP AEQEQICYVH CSYCDTILAV GVPCSSLFQT VTVRCGHCSN 60 LLYVNLRALL LPAAAANNQL PPFGQPLLSP TSPHGLLDAE AMSFQAPSLP GAEPPSACVS 120 GVTSINNTCG GNTTTSSAMS SMAPPPAKHA LQEAQQLPRT AASVNRTSEK RQRVPSAYNR 180 FIKDEIQRIK ASNPDITHRE AFSAAAKNWA HFPHIHFGLM PDQGLKKNPM QNQEGAECML 240 FMDGLYASMG FSPF |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Zm.23998 | 0.0 | ear| meristem |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G054795 |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in leaf primordia, young leaves, floret meristems, floral organ primordia, stamens and carpels. Does not show polar expression pattern. {ECO:0000269|PubMed:17216490, ECO:0000269|PubMed:17351053}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | May be involved in leaf cell growth and differentiation, rather than abaxial cell fate determination. {ECO:0000250}. | |||||
UniProt | May be involved in leaf cell growth and differentiation, rather than abaxial cell fate determination. {ECO:0000269|PubMed:17351053}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G054795_P01 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by WOX3. {ECO:0000269|PubMed:17351053}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT035706 | 0.0 | BT035706.1 Zea mays full-length cDNA clone ZM_BFb0078M02 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001132033.1 | 0.0 | putative YABBY domain transcription factor family protein | ||||
Swissprot | Q01JG2 | 1e-109 | YAB5_ORYSI; Protein YABBY 5 | ||||
Swissprot | Q0JBF0 | 1e-109 | YAB5_ORYSJ; Protein YABBY 5 | ||||
TrEMBL | A0A3L6FS29 | 0.0 | A0A3L6FS29_MAIZE; Protein YABBY 5 | ||||
TrEMBL | B4FF18 | 0.0 | B4FF18_MAIZE; Axial regulator YABBY 1 | ||||
STRING | GRMZM2G054795_P01 | 0.0 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1445 | 38 | 121 | Representative plant | OGRP17343 | 2 | 3 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G45190.1 | 1e-41 | YABBY family protein |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G054795_P01 |
Entrez Gene | 100193442 |
Publications ? help Back to Top | |||
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