PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G054277_P01 | ||||||||
Common Name | LOC100381893 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | NAC | ||||||||
Protein Properties | Length: 202aa MW: 22837.2 Da PI: 11.7003 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 114.4 | 1.1e-35 | 11 | 138 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 lppGfrFhPtdeelvv yL++k+ +++l++ vi+ v d+ +++Pwd a+e e yfFs r+ + t r++r + sgyWkatgk+k+ GRMZM2G054277_P01 11 LPPGFRFHPTDEELVVLYLRRKALARPLPA-AVIPVVhDVARLDPWDVT---GASEGEGYFFSLRRAPA-T-GRRRR-AGSGYWKATGKEKP 95 79****************************.8899998**********7...3466799****997754.3.46666.589*********** PP NAM 92 vlsk.....kgelvglkktLvfykg.rapkgektdWvmheyrl 128 v+ + ++ lvg+k+ L+f++ p +++t Wvmheyrl GRMZM2G054277_P01 96 VFLQcggeqRQLLVGVKTALAFHRRePPPPSSRTGWVMHEYRL 138 ***9876544445**********762455678*********98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.44E-43 | 8 | 171 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 44.011 | 11 | 171 | IPR003441 | NAC domain |
Pfam | PF02365 | 3.4E-24 | 12 | 138 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0000037 | anatomy | shoot apex | ||||
PO:0006310 | anatomy | tassel floret | ||||
PO:0006339 | anatomy | juvenile vascular leaf | ||||
PO:0006340 | anatomy | adult vascular leaf | ||||
PO:0006341 | anatomy | primary shoot system | ||||
PO:0008018 | anatomy | transition vascular leaf | ||||
PO:0009001 | anatomy | fruit | ||||
PO:0009025 | anatomy | vascular leaf | ||||
PO:0009054 | anatomy | inflorescence bract | ||||
PO:0009066 | anatomy | anther | ||||
PO:0009089 | anatomy | endosperm | ||||
PO:0020040 | anatomy | leaf base | ||||
PO:0020104 | anatomy | leaf sheath | ||||
PO:0020126 | anatomy | tassel inflorescence | ||||
PO:0020127 | anatomy | primary root | ||||
PO:0020136 | anatomy | ear inflorescence | ||||
PO:0020142 | anatomy | stem internode | ||||
PO:0020148 | anatomy | shoot apical meristem | ||||
PO:0025142 | anatomy | leaf tip | ||||
PO:0025287 | anatomy | seedling coleoptile | ||||
PO:0025541 | anatomy | bundle sheath cell | ||||
PO:0025589 | anatomy | leaf lamina tip | ||||
PO:0001007 | developmental stage | pollen development stage | ||||
PO:0001009 | developmental stage | D pollen mother cell meiosis stage | ||||
PO:0001052 | developmental stage | vascular leaf expansion stage | ||||
PO:0001053 | developmental stage | vascular leaf post-expansion stage | ||||
PO:0001083 | developmental stage | inflorescence development stage | ||||
PO:0001094 | developmental stage | plant embryo coleoptilar stage | ||||
PO:0001095 | developmental stage | plant embryo true leaf formation stage | ||||
PO:0001180 | developmental stage | plant proembryo stage | ||||
PO:0007001 | developmental stage | early whole plant fruit ripening stage | ||||
PO:0007003 | developmental stage | IL.03 full inflorescence length reached stage | ||||
PO:0007015 | developmental stage | radicle emergence stage | ||||
PO:0007026 | developmental stage | FL.00 first flower(s) open stage | ||||
PO:0007031 | developmental stage | mid whole plant fruit ripening stage | ||||
PO:0007032 | developmental stage | whole plant fruit formation stage up to 10% | ||||
PO:0007045 | developmental stage | coleoptile emergence stage | ||||
PO:0007063 | developmental stage | LP.07 seven leaves visible stage | ||||
PO:0007065 | developmental stage | LP.05 five leaves visible stage | ||||
PO:0007072 | developmental stage | LP.18 eighteen leaves visible stage | ||||
PO:0007094 | developmental stage | LP.01 one leaf visible stage | ||||
PO:0007101 | developmental stage | LP.09 nine leaves visible stage | ||||
PO:0007106 | developmental stage | LP.03 three leaves visible stage | ||||
PO:0007112 | developmental stage | 1 main shoot growth stage | ||||
PO:0007116 | developmental stage | LP.11 eleven leaves visible stage | ||||
PO:0007123 | developmental stage | LP.06 six leaves visible stage | ||||
PO:0007633 | developmental stage | endosperm development stage | ||||
PO:0021004 | developmental stage | inflorescence initiation stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 202 aa Download sequence Send to blast |
MDRPAQAPTQ LPPGFRFHPT DEELVVLYLR RKALARPLPA AVIPVVHDVA RLDPWDVTGA 60 SEGEGYFFSL RRAPATGRRR RAGSGYWKAT GKEKPVFLQC GGEQRQLLVG VKTALAFHRR 120 EPPPPSSRTG WVMHEYRLAV PRGVADQRKK NARHGCVAEP GEWVVCRVFL KNRPNRDAGS 180 KTLRHGASAR RRRRQQQPED VR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3swm_A | 1e-28 | 11 | 171 | 20 | 168 | NAC domain-containing protein 19 |
3swm_B | 1e-28 | 11 | 171 | 20 | 168 | NAC domain-containing protein 19 |
3swm_C | 1e-28 | 11 | 171 | 20 | 168 | NAC domain-containing protein 19 |
3swm_D | 1e-28 | 11 | 171 | 20 | 168 | NAC domain-containing protein 19 |
3swp_A | 1e-28 | 11 | 171 | 20 | 168 | NAC domain-containing protein 19 |
3swp_B | 1e-28 | 11 | 171 | 20 | 168 | NAC domain-containing protein 19 |
3swp_C | 1e-28 | 11 | 171 | 20 | 168 | NAC domain-containing protein 19 |
3swp_D | 1e-28 | 11 | 171 | 20 | 168 | NAC domain-containing protein 19 |
Search in ModeBase |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G054277 |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator of the mannan synthase CSLA9. Recognizes and binds to DNA-specific sequence of CSLA9 promoter. {ECO:0000269|PubMed:24243147}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G054277_P01 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU969198 | 0.0 | EU969198.1 Zea mays clone 326761 NAC domain-containing protein 18 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001348480.1 | 1e-146 | uncharacterized protein LOC100381893 isoform 1 | ||||
Swissprot | O22798 | 5e-45 | NAC41_ARATH; NAC domain-containing protein 41 | ||||
TrEMBL | A0A1D6I870 | 1e-144 | A0A1D6I870_MAIZE; Uncharacterized protein | ||||
STRING | GRMZM2G054277_P01 | 1e-145 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP12805 | 27 | 35 | Representative plant | OGRP13125 | 4 | 5 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G33480.1 | 2e-31 | NAC domain containing protein 41 |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G054277_P01 |
Publications ? help Back to Top | |||
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