PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G052671_P02
Common NameLOC100384128, WRKY71
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family WRKY
Protein Properties Length: 567aa    MW: 60340.8 Da    PI: 6.401
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G052671_P02genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY104.17.7e-33373431159
                        ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
               WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                        ldDgy+WrKYGqK+vkg+++prsYY+Ct +gC+v+k+ver+++d k v++tYeg+Hnhe
  GRMZM2G052671_P02 373 LDDGYRWRKYGQKVVKGNPNPRSYYKCTNPGCSVRKHVERASHDLKSVITTYEGKHNHE 431
                        59********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.804.3E-37358433IPR003657WRKY domain
SuperFamilySSF1182901.44E-28365433IPR003657WRKY domain
PROSITE profilePS5081137.769368433IPR003657WRKY domain
SMARTSM007741.0E-37373432IPR003657WRKY domain
PfamPF031063.9E-25374431IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 567 aa     Download sequence    Send to blast
MSGASNYGSL IDEWLLPPTP SPRTLMSSFL NEEFSSAPFS GPHDQSEKSR EVLNSSDEVP  60
SHAVKGPFQN GFPNLFSAKS NSNGGLAERR AARAGFSVPK IDTSRVGSST VIRSPVSIPP  120
GLSPTTLLES PVFLYNKMAQ PSPTTGTLPF LMATNDKSTI SPAAKITEDS TFDNDVFSFQ  180
PHLGSEQTGF STAEKDYGAY ERKQSLSNIH QQESSLQSSF TAVKDNTSAT IVKAKPSSSS  240
MFSDSHYSAD QQQADETNIK VQGKGVEARS AAFAPVSAHS DASLLESQEA LDVSSTLSNE  300
EDERATHGTV SIECDGDEAD AVSKRRKLEL DALEATATAT TSTTNTIDMG PAASRAVREP  360
RVVVQTTSEV DILDDGYRWR KYGQKVVKGN PNPRSYYKCT NPGCSVRKHV ERASHDLKSV  420
ITTYEGKHNH EVPAARNSGQ GSSSAPSASQ AVGSHRRQEP AQASFAHFGT ASFSSFGLPP  480
SGQLGPTTGN FGFGMVPPGM TIPVPSLGSL APVKMVGNSS TMQGYPGLMV PGEPKAEPVS  540
QPLIQMANAS PPAYQQILSR PPFGHQM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-38364434878Probable WRKY transcription factor 4
2lex_A2e-38364434878Probable WRKY transcription factor 4
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.376560.0cell culture| meristem| ovary| shoot
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G052671
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G052671_P02
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0616600.0BT061660.1 Zea mays full-length cDNA clone ZM_BFb0170F09 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001170182.10.0uncharacterized protein LOC100384128
TrEMBLC0HH540.0C0HH54_MAIZE; Putative WRKY transcription factor 34
STRINGGRMZM2G052671_P010.0(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56270.12e-58WRKY DNA-binding protein 2