PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G052102_P01 | ||||||||
Common Name | LOC103654746, ZEAMMB73_192299, Zm.15154 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | bZIP | ||||||||
Protein Properties | Length: 258aa MW: 27339.6 Da PI: 6.4031 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 35 | 3e-11 | 126 | 172 | 4 | 50 |
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkele 50 kr +r NR +A+rsR RK+++i eLe+ v +L+ e +aL ++ GRMZM2G052102_P01 126 PKRVKRILANRQSAQRSRVRKLQYISELERSVTSLQMEVSALSPRVA 172 5999*********************************9999987665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 4.6E-13 | 123 | 187 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 9.415 | 125 | 174 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF00170 | 5.8E-10 | 125 | 176 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 1.13E-11 | 127 | 181 | No hit | No description |
Gene3D | G3DSA:1.20.5.170 | 1.8E-11 | 127 | 179 | No hit | No description |
CDD | cd14703 | 1.89E-21 | 128 | 178 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 130 | 145 | IPR004827 | Basic-leucine zipper domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 258 aa Download sequence Send to blast |
MAQLPPRAPS AAPQDHWPPA AGEFLGFAAA RRGAHRRSAS DSAAFLEAVP IDDDVVIGGG 60 GGGGDDFDRL DHDQLLSMFS DVDVSVSVSV SGSAGERAQL MDAGGAGADD GVADSSPAAA 120 DGVAEPKRVK RILANRQSAQ RSRVRKLQYI SELERSVTSL QMEVSALSPR VAFLDHHRSL 180 LTVGNSHLKQ RIAALAQDKI FKDAHQEALE KEIQRLRQVY QQQQVKVATT GGADIATAAS 240 PSMQARQELL ACEGAAIR |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Zm.15154 | 0.0 | meristem |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G052102 |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots and shoots. {ECO:0000269|PubMed:18065552}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription regulator. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G052102_P01 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By white light. {ECO:0000269|PubMed:18065552}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU968745 | 1e-129 | EU968745.1 Zea mays clone 323889 mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008679793.1 | 0.0 | basic leucine zipper 19 | ||||
Swissprot | Q6K3R9 | 5e-89 | BZP19_ORYSJ; Basic leucine zipper 19 | ||||
TrEMBL | A0A3L6F971 | 0.0 | A0A3L6F971_MAIZE; Basic leucine zipper 19 | ||||
TrEMBL | K7UA52 | 0.0 | K7UA52_MAIZE; Putative bZIP transcription factor superfamily protein | ||||
STRING | GRMZM2G052102_P01 | 0.0 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1322 | 38 | 125 | Representative plant | OGRP126 | 17 | 181 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G58120.1 | 8e-46 | bZIP family protein |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G052102_P01 |
Entrez Gene | 103654746 |