PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G050851_P01
Common NameEREB167, LOC100384698
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family ERF
Protein Properties Length: 357aa    MW: 40198.9 Da    PI: 8.9064
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G050851_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.32.2e-1998148256
                AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                         y+G+r+++ +g+W+AeIrdp++     r++lg++ t+e+Aa+a++a ++k++g+
  GRMZM2G050851_P01  98 PYRGIRRRP-WGKWAAEIRDPTK---GVRVWLGTYKTPEDAARAYDAEARKIRGN 148
                        7********.**********964...4*************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003801.2E-3798161IPR001471AP2/ERF domain
PROSITE profilePS5103223.59198155IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.3E-3199156IPR001471AP2/ERF domain
PRINTSPR003672.0E-1099110IPR001471AP2/ERF domain
CDDcd000181.07E-3199156No hitNo description
PfamPF008472.3E-1199147IPR001471AP2/ERF domain
SuperFamilySSF541719.81E-2299156IPR016177DNA-binding domain
PRINTSPR003672.0E-10121137IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 357 aa     Download sequence    Send to blast
MAKNYRERRL KRVMKIDEGE DDFEADYQAF SKKYDEKDEC HYKFMALLPF KNGLPNVSPP  60
TKEKVGLHFA MKDVVISQKP TTTNEGIIVR PKCKRKTPYR GIRRRPWGKW AAEIRDPTKG  120
VRVWLGTYKT PEDAARAYDA EARKIRGNKA KVNFPNEPPN MVSNSPKLIV TAMTTMAIPA  180
DKLNANELMC HKNYSNEDFF SMVNFSGNNG NFISTAAFGL QCIKKPRVPY GIPRIGECSN  240
QNRMTYGLSN GLGNEASRNL NGCSFLPQAG MPIFIQPTFD GPSRMIGRND GVIVPTLTNA  300
TPMAGVDAAK KMNQEPIFQE MESEDIPSIL QGDVSEDVAA EISMWEFYDN LLDNKEN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A9e-2199155360ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.947820.0embryo| endosperm
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G050851
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G050851_P01
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7275460.0KJ727546.1 Zea mays clone pUT5406 AP2-EREBP transcription factor (EREB167) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001353801.10.0uncharacterized protein LOC100384698
TrEMBLA0A060D0T10.0A0A060D0T1_MAIZE; AP2-EREBP transcription factor (Fragment)
TrEMBLA0A1D6KNH40.0A0A1D6KNH4_MAIZE; Ethylene-responsive transcription factor RAP2-2
STRINGGRMZM2G050851_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP168501012
Representative plantOGRP1989522
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47520.13e-24ERF family protein