PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G048450_P01
Common NameLOC100285621
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family WRKY
Protein Properties Length: 383aa    MW: 40762.7 Da    PI: 5.4729
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G048450_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY97.11.2e-30178236259
                        --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
               WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                        +D ++WrKYGqK++kgs++pr+YYrC+s+ gC ++k+vers+ dp++++ tY+geHnh 
  GRMZM2G048450_P01 178 SDMWAWRKYGQKPIKGSPYPRGYYRCSSSkGCAARKQVERSRADPNTFILTYTGEHNHA 236
                        79*************************998****************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.804.2E-30167238IPR003657WRKY domain
PROSITE profilePS5081132.891172238IPR003657WRKY domain
SuperFamilySSF1182901.2E-25176238IPR003657WRKY domain
SMARTSM007741.4E-36177237IPR003657WRKY domain
PfamPF031061.5E-25179235IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007263Biological Processnitric oxide mediated signal transduction
GO:0009739Biological Processresponse to gibberellin
GO:0042742Biological Processdefense response to bacterium
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000037anatomyshoot apex
PO:0006310anatomytassel floret
PO:0006339anatomyjuvenile vascular leaf
PO:0006340anatomyadult vascular leaf
PO:0006341anatomyprimary shoot system
PO:0006354anatomyear floret
PO:0006505anatomycentral spike of ear inflorescence
PO:0008018anatomytransition vascular leaf
PO:0009001anatomyfruit
PO:0009009anatomyplant embryo
PO:0009025anatomyvascular leaf
PO:0009054anatomyinflorescence bract
PO:0009066anatomyanther
PO:0009074anatomystyle
PO:0009084anatomypericarp
PO:0009089anatomyendosperm
PO:0020040anatomyleaf base
PO:0020104anatomyleaf sheath
PO:0020126anatomytassel inflorescence
PO:0020127anatomyprimary root
PO:0020136anatomyear inflorescence
PO:0020142anatomystem internode
PO:0020148anatomyshoot apical meristem
PO:0025142anatomyleaf tip
PO:0025287anatomyseedling coleoptile
PO:0001007developmental stagepollen development stage
PO:0001009developmental stageD pollen mother cell meiosis stage
PO:0001052developmental stagevascular leaf expansion stage
PO:0001053developmental stagevascular leaf post-expansion stage
PO:0001083developmental stageinflorescence development stage
PO:0001094developmental stageplant embryo coleoptilar stage
PO:0001095developmental stageplant embryo true leaf formation stage
PO:0001180developmental stageplant proembryo stage
PO:0007001developmental stageearly whole plant fruit ripening stage
PO:0007003developmental stageIL.03 full inflorescence length reached stage
PO:0007006developmental stageIL.00 inflorescence just visible stage
PO:0007015developmental stageradicle emergence stage
PO:0007016developmental stagewhole plant flowering stage
PO:0007022developmental stageseed imbibition stage
PO:0007026developmental stageFL.00 first flower(s) open stage
PO:0007031developmental stagemid whole plant fruit ripening stage
PO:0007032developmental stagewhole plant fruit formation stage up to 10%
PO:0007045developmental stagecoleoptile emergence stage
PO:0007063developmental stageLP.07 seven leaves visible stage
PO:0007065developmental stageLP.05 five leaves visible stage
PO:0007072developmental stageLP.18 eighteen leaves visible stage
PO:0007094developmental stageLP.01 one leaf visible stage
PO:0007101developmental stageLP.09 nine leaves visible stage
PO:0007104developmental stageLP.15 fifteen leaves visible stage
PO:0007106developmental stageLP.03 three leaves visible stage
PO:0007112developmental stage1 main shoot growth stage
PO:0007116developmental stageLP.11 eleven leaves visible stage
PO:0007123developmental stageLP.06 six leaves visible stage
PO:0007633developmental stageendosperm development stage
PO:0021004developmental stageinflorescence initiation stage
Sequence ? help Back to Top
Protein Sequence    Length: 383 aa     Download sequence    Send to blast
MEEERCFNNW DLDAVVRLGC RRRLSPPRQP DPFASLLPPT LPSPSPSPPQ KEKPVVPALA  60
KGPEPEPYAG WRFPNLGAGG GQDGDELMRA MLAVQPSLPQ PLPTTTPTPT PTLPPAAGEH  120
RQSTVTAVDV PLPQVRPAPA ARAQPSGRQV PGAVPRSKRR KNQVKKVVCH VPADGSSSDM  180
WAWRKYGQKP IKGSPYPRGY YRCSSSKGCA ARKQVERSRA DPNTFILTYT GEHNHAAPTH  240
RNSLAGTTRN KFPSSAAPPP PPPSVVVGGA GAGDAQHQQP SPSPASTSTA GLSPTTPLRT  300
PSMEEEEMDD DDDELLVEDM EMVGEDELLF LNIDADAEAD AGAPLEPMPS LFDVVDEPFL  360
NSPWLTATSS AGEPATGAAG ARS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B5e-20161239280Disease resistance protein RRS1
5w3x_D5e-20161239280Disease resistance protein RRS1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.349590.0ear
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G048450
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00561DAPTransfer from AT5G52830Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G048450_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0613700.0BT061370.1 Zea mays full-length cDNA clone ZM_BFb0140H07 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001151984.10.0WRKY39v2 - superfamily of TFs having WRKY and zinc finger domains
TrEMBLC0HGB40.0C0HGB4_MAIZE; WRKY transcription factor
STRINGGRMZM2G048450_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP53583361
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52830.17e-50WRKY DNA-binding protein 27