PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G047918_P01 | ||||||||
Common Name | EREB191 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | ERF | ||||||||
Protein Properties | Length: 242aa MW: 26053.3 Da PI: 5.9636 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 57.2 | 4.2e-18 | 48 | 95 | 1 | 52 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkk 52 + y+GVr + +g+Wv+eIr+p++ + r++lg+f t+e+Aa+a++aa++ GRMZM2G047918_P01 48 PSYRGVRMRA-WGKWVSEIREPRK---KSRIWLGTFPTPEMAARAHDAAALV 95 57*****998.**********843...6*********************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 1.82E-19 | 48 | 107 | No hit | No description |
Pfam | PF00847 | 1.2E-12 | 48 | 95 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.53E-21 | 49 | 106 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 23.037 | 49 | 106 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 3.7E-35 | 49 | 112 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.2E-31 | 49 | 108 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.3E-10 | 50 | 61 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.3E-10 | 72 | 88 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0006339 | anatomy | juvenile vascular leaf | ||||
PO:0006340 | anatomy | adult vascular leaf | ||||
PO:0008018 | anatomy | transition vascular leaf | ||||
PO:0009025 | anatomy | vascular leaf | ||||
PO:0009089 | anatomy | endosperm | ||||
PO:0020040 | anatomy | leaf base | ||||
PO:0025142 | anatomy | leaf tip | ||||
PO:0001052 | developmental stage | vascular leaf expansion stage | ||||
PO:0001053 | developmental stage | vascular leaf post-expansion stage | ||||
PO:0007001 | developmental stage | early whole plant fruit ripening stage | ||||
PO:0007063 | developmental stage | LP.07 seven leaves visible stage | ||||
PO:0007633 | developmental stage | endosperm development stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 242 aa Download sequence Send to blast |
MPDRAESSPA SSREASSSPP LSATETAARR SASGCGKRAR ARDGEKHPSY RGVRMRAWGK 60 WVSEIREPRK KSRIWLGTFP TPEMAARAHD AAALVVKGPA AVLNFPEMAA ALPRPATAAP 120 RDVQAAAVRA AAMEPSMMLG PTAPLPRSAL APVKGQVHDD ELEAIVELPP LDEDFSELLV 180 PLGTASFSFH DATQASWRDP EWIDHDAGYM AAARDADELF GFGPDGDHGW AQPFGSTFLW 240 NM |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 4e-18 | 44 | 106 | 9 | 72 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G047918 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G047918_P01 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KJ727667 | 0.0 | KJ727667.1 Zea mays clone pUT5594 AP2-EREBP transcription factor (EREB191) gene, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008645616.1 | 1e-173 | ethylene-responsive transcription factor TINY | ||||
TrEMBL | A0A060D6D0 | 1e-171 | A0A060D6D0_MAIZE; AP2-EREBP transcription factor (Fragment) | ||||
STRING | GRMZM2G047918_P01 | 1e-172 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP159 | 35 | 354 | Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G11590.1 | 2e-31 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G047918_P01 |
Entrez Gene | 103627057 |