PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G042250_P01
Common Namerld2
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family HD-ZIP
Protein Properties Length: 840aa    MW: 92098.2 Da    PI: 6.1524
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G042250_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.62.2e-182785357
                       --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
           Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                       k  ++t+eq+e+Le+l+  +++ps ++r++L +++    +++ +q+kvWFqNrR ++k+
  GRMZM2G042250_P01 27 KYVRYTPEQVEVLERLYIDCPKPSSSRRQQLLRECpilsNIEPKQIKVWFQNRRCRDKQ 85
                       5678****************************************************996 PP
2START161.56.4e-511653732205
                        HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEE CS
              START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..gal 91 
                        +aee+ +e+++ka+ ++  Wv+++ +++g++++ +++ s++++g a+ra+g+v  +++++ e+l d++  W +++++ e+      g  g++
  GRMZM2G042250_P01 165 IAEETFTEFLSKATGTAIDWVQMPGMKPGPDSVGIVAISHGCRGVAARACGLVNLEPTKVIEILKDRP-SWFRDCRSLEVFTMFPAGngGTI 255
                        688999****************************************************7777777777.***********999999999*** PP

                        EEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHH CS
              START  92 qlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphw 179
                        +l++++++a+++lvp Rdf+++Ry+ ++++g++v++++S++     p+    +++vRae+lpSg+l++p+++g+s v++v+h dl+++++++
  GRMZM2G042250_P01 256 ELIYMQMYAPTTLVPaRDFWTLRYTTTMEDGSLVVCERSLTGSGGGPNaasAQQFVRAEMLPSGYLVRPCEGGGSIVHIVDHLDLEAWSVPE 347
                        ******************************************999999998999************************************** PP

                        HHHHHHHHHHHHHHHHHHHHTXXXXX CS
              START 180 llrslvksglaegaktwvatlqrqce 205
                        +lr+l++s+++ ++k+++ +l+++++
  GRMZM2G042250_P01 348 VLRPLYESSRVVAQKMTTVALRHLRQ 373
                        *****************999998765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.9E-17885IPR009057Homeodomain-like
PROSITE profilePS5007115.2892286IPR001356Homeobox domain
SMARTSM003893.9E-152490IPR001356Homeobox domain
SuperFamilySSF466898.98E-162688IPR009057Homeodomain-like
CDDcd000861.26E-152787No hitNo description
PfamPF000466.2E-162885IPR001356Homeobox domain
CDDcd146863.77E-679118No hitNo description
PROSITE profilePS5084826.76155383IPR002913START domain
CDDcd088751.25E-74159375No hitNo description
Gene3DG3DSA:3.30.530.201.5E-21163348IPR023393START-like domain
SMARTSM002341.0E-38164374IPR002913START domain
PfamPF018521.1E-48165373IPR002913START domain
SuperFamilySSF559617.42E-37165376No hitNo description
PfamPF086702.4E-49697839IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 840 aa     Download sequence    Send to blast
MAAAVAMRGG SSDSGGFDKV PGMDSGKYVR YTPEQVEVLE RLYIDCPKPS SSRRQQLLRE  60
CPILSNIEPK QIKVWFQNRR CRDKQRKESS RLQAVNRKLT AMNKLLMEEN ERLQKQVSQL  120
VHENAHMRQQ LQNTSLANDT SCESNVTAPP NAIRDASNPS GLLAIAEETF TEFLSKATGT  180
AIDWVQMPGM KPGPDSVGIV AISHGCRGVA ARACGLVNLE PTKVIEILKD RPSWFRDCRS  240
LEVFTMFPAG NGGTIELIYM QMYAPTTLVP ARDFWTLRYT TTMEDGSLVV CERSLTGSGG  300
GPNAASAQQF VRAEMLPSGY LVRPCEGGGS IVHIVDHLDL EAWSVPEVLR PLYESSRVVA  360
QKMTTVALRH LRQIAQETSG EVVYALGRQP AVLRTFSQRL SRGFNDAISG FNDDGWSVMG  420
GDGIEDVVVA CNSTKKIRNN SNAGITFGAP GGIICAKASM LLQSVPPAVL VRFLREHRSE  480
WADYNIDAYL ASSLKTSACS LPGLRPMRFS GGQMIMPLAH TVENEEILEV VRLEGQPLTH  540
DEALLSRDIH LLQLCTGIDE KSVGSSFQLV FAPIDEHFPD DAPLISSGFR VIPLDMKTDG  600
VSSGRTLDLA SSLDVGSAAP QASGDAPPDD CNLRSVLTIA FQFPYEMHLQ DSVATMARQY  660
VRSVVSAVQR VSMAISPSQS GLNAGQRMLS GFPEAATLAR WVCQSYHYHL GVELLNQSDE  720
AGEALLKMLW HHPDAVLCCS FKEKPMFTFA NKAGLDMLET SLIALQDLTL DKIFDESGRK  780
AIFSDISKLM EQGYAYLPSG VCMSGMGRHV SFDQAVAWKV LGEDSSVHCL AFCFVNWSFV
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.726180.0ear| meristem
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G042250
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in stems, leaf sheaths and blades and panicles. {ECO:0000269|PubMed:17999151}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G042250_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ2865260.0DQ286526.1 Zea mays rolled leaf 2 (rld2) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008665074.10.0rolled leaf 2 isoform X2
SwissprotA2XBL90.0HOX10_ORYSI; Homeobox-leucine zipper protein HOX10
TrEMBLA0A096QGQ90.0A0A096QGQ9_MAIZE; Rolled leaf2
STRINGSb01g050000.10.0(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60690.10.0HD-ZIP family protein