PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G041415_P01 | ||||||||
Common Name | myb8, Zm.17476 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | MYB | ||||||||
Protein Properties | Length: 226aa MW: 24238.1 Da PI: 8.8924 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 55.5 | 1.3e-17 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd++lv ++k +G g+W++ ++ g+ R++k+c++rw +yl GRMZM2G041415_P01 14 KGAWTKEEDQRLVAYIKAHGEGCWRSLPKAAGLLRCGKSCRLRWINYL 61 79******************************99************97 PP | |||||||
2 | Myb_DNA-binding | 56.3 | 7.4e-18 | 67 | 111 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg++T+eEd+ ++++++ lG++ W++Ia+ ++ gRt++++k++w+++ GRMZM2G041415_P01 67 RGNFTQEEDDVIIKLHQVLGNK-WSLIAAQLP-GRTDNEIKNYWNTH 111 89********************.*********.************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 4.1E-24 | 5 | 64 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 16.922 | 9 | 61 | IPR017930 | Myb domain |
SMART | SM00717 | 1.2E-13 | 13 | 63 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 2.82E-30 | 13 | 108 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 2.3E-15 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 6.20E-11 | 16 | 61 | No hit | No description |
PROSITE profile | PS51294 | 28.063 | 62 | 116 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.6E-29 | 65 | 117 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.7E-16 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 6.6E-16 | 67 | 111 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 5.07E-12 | 69 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 226 aa Download sequence Send to blast |
MGRSPCCEKA HTNKGAWTKE EDQRLVAYIK AHGEGCWRSL PKAAGLLRCG KSCRLRWINY 60 LRPDLKRGNF TQEEDDVIIK LHQVLGNKWS LIAAQLPGRT DNEIKNYWNT HIKRKLIARG 120 IDPRTHQPAS AAAVAPAAAA AAAAQSSFRH HGDDEAVARR SCSRDSGCIA AHSSDDDDST 180 SGSLPHQHAV GGIDLNLSLS PPTSQPSSPA AAKGVVASGY GQGSES |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 5e-31 | 14 | 116 | 7 | 108 | B-MYB |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Zm.17476 | 0.0 | meristem |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G041415 |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots, stems, flower buds, and siliques. {ECO:0000269|PubMed:9839469}. | |||||
Uniprot | TISSUE SPECIFICITY: Widely expressed at low level. Highly expressed in siliques. Weakly expressed in seedlings, young and mature leaves, cauline leaves, stems, flower buds and roots. {ECO:0000269|PubMed:9839469}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription repressor involved in regulation of protection against UV. Mediates transcriptional repression of CYP73A5, the gene encoding trans-cinnamate 4-monooxygenase, thereby regulating the accumulation of the UV-protectant compound sinapoylmalate. {ECO:0000269|PubMed:11080161}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G041415_P01 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By ethylene, asbscisic acid (ABA), auxin (IAA), and Pseudomonas syringae pv. phaseolica. {ECO:0000269|PubMed:9839469}. | |||||
UniProt | INDUCTION: Down-regulated by exposure to UV-B light. {ECO:0000269|PubMed:11080161}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AM156905 | 0.0 | AM156905.1 Zea mays mRNA for transcription factor MYB8 (myb8 gene). |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001106037.1 | 1e-167 | transcription factor MYB8 | ||||
Swissprot | Q38851 | 5e-87 | MYB6_ARATH; Transcription repressor MYB6 | ||||
Swissprot | Q9SZP1 | 1e-86 | MYB4_ARATH; Transcription repressor MYB4 | ||||
TrEMBL | A0A3L6FJM8 | 1e-165 | A0A3L6FJM8_MAIZE; Transcription repressor MYB4 | ||||
TrEMBL | Q2A703 | 1e-165 | Q2A703_MAIZE; Myb transcription factor8 | ||||
STRING | GRMZM2G041415_P01 | 1e-166 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP116 | 37 | 448 | Representative plant | OGRP5 | 17 | 1784 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38620.1 | 8e-87 | myb domain protein 4 |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G041415_P01 |
Entrez Gene | 100125635 |