PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G038158_P01
Common NameLOC100192069, ZEAMMB73_967321
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family WRKY
Protein Properties Length: 370aa    MW: 39471.9 Da    PI: 4.9506
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G038158_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY93.81.2e-29173230359
                        -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
               WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                        D ++WrKYGqK++kgs++pr+YYrC+s+ gC ++k+vers+ dp++++ t++geHnh 
  GRMZM2G038158_P01 173 DVWAWRKYGQKPIKGSPYPRGYYRCSSSkGCAARKQVERSRADPNTFILTFTGEHNHA 230
                        99************************998****************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PRINTSPR012176.6E-102032No hitNo description
PRINTSPR012176.6E-104157No hitNo description
PRINTSPR012176.6E-1082103No hitNo description
PRINTSPR012176.6E-10103119No hitNo description
PRINTSPR012176.6E-10124141No hitNo description
Gene3DG3DSA:2.20.25.805.9E-29162232IPR003657WRKY domain
SuperFamilySSF1182901.05E-24170232IPR003657WRKY domain
SMARTSM007741.8E-34171231IPR003657WRKY domain
PROSITE profilePS5081132.237173232IPR003657WRKY domain
PfamPF031062.9E-24173229IPR003657WRKY domain
PRINTSPR012176.6E-10247259No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 370 aa     Download sequence    Send to blast
MEEERCFNNW DLDAVVRLGC RRLLSPSPQP DPFASFLPPP PQKEKPVAPA PAKEPEPHTA  60
WRFPDLGAGG GQDGEELLRA LLADQPPLHQ PLPTPAATPT PTPTATPPPP SQQQHLQPTV  120
TAVDVAPPQV RPAPARAQPS GRQVPGGVPR SKRRKNQVKK VVCHVPADGS SPDVWAWRKY  180
GQKPIKGSPY PRGYYRCSSS KGCAARKQVE RSRADPNTFI LTFTGEHNHA APTHRNSLAG  240
TTRHKFPSSA APQPPPPSVV VGGDAQDRQP SPSPTSTSTA GLSPTTPLRT PSMEEEEEEE  300
EEEEEEDELL VEDMEMAGED ELLFLSTDAD AGAPTSSLFD VVGEPFLSPP WVTAASSAGE  360
PATGAAGAGS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B9e-19155233280Disease resistance protein RRS1
5w3x_D9e-19155233280Disease resistance protein RRS1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.258180.0cell culture| tassel
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G038158
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in the expression of defense genes in innate immune response of plants. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Activates WRKY 29, SIRK and its own promoters. {ECO:0000269|PubMed:11875555}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G038158_P01
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced after flagellin treatment. {ECO:0000269|PubMed:11875555}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0343630.0BT034363.1 Zea mays full-length cDNA clone ZM_BFb0129I18 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001130964.10.0uncharacterized protein LOC100192069
SwissprotO046098e-51WRK22_ARATH; WRKY transcription factor 22
TrEMBLB4FB750.0B4FB75_MAIZE; Uncharacterized protein
STRINGGRMZM2G038158_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP53583361
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01250.13e-48WRKY family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Coego A, et al.
    The TRANSPLANTA collection of Arabidopsis lines: a resource for functional analysis of transcription factors based on their conditional overexpression.
    Plant J., 2014. 77(6): p. 944-53
    [PMID:24456507]
  3. Gkizi D, et al.
    The Innate Immune Signaling System as a Regulator of Disease Resistance and Induced Systemic Resistance Activity Against Verticillium dahliae.
    Mol. Plant Microbe Interact., 2016. 29(4): p. 313-23
    [PMID:26780421]
  4. Kloth KJ, et al.
    AtWRKY22 promotes susceptibility to aphids and modulates salicylic acid and jasmonic acid signalling.
    J. Exp. Bot., 2016. 67(11): p. 3383-96
    [PMID:27107291]
  5. Camborde L, et al.
    Detection of nucleic acid-protein interactions in plant leaves using fluorescence lifetime imaging microscopy.
    Nat Protoc, 2017. 12(9): p. 1933-1950
    [PMID:28837131]
  6. Wang S, et al.
    Bacillus cereus AR156 Activates Defense Responses to Pseudomonas syringae pv. tomato in Arabidopsis thaliana Similarly to flg22.
    Mol. Plant Microbe Interact., 2018. 31(3): p. 311-322
    [PMID:29090631]