PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | GRMZM2G036703_P01 | ||||||||
Common Name | ZEAMMB73_953393 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
|
||||||||
Family | WRKY | ||||||||
Protein Properties | Length: 593aa MW: 62785.6 Da PI: 6.8336 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 103.7 | 9.9e-33 | 246 | 302 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 dDgynWrKYGqK++kgse+prsYY+Ct++gCp+kkkvers d++++ei+Y+g+Hnh GRMZM2G036703_P01 246 DDGYNWRKYGQKQMKGSENPRSYYKCTFPGCPTKKKVERSL-DGQITEIVYRGTHNHA 302 8****************************************.***************7 PP | |||||||
2 | WRKY | 103.4 | 1.2e-32 | 411 | 469 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK+vkg+++prsYY+Ct++gCpv+k+ver+ +d ++v++tYeg+Hnh+ GRMZM2G036703_P01 411 LDDGYRWRKYGQKVVKGNPNPRSYYKCTTPGCPVRKHVERACHDLRAVITTYEGKHNHD 469 59********************************************************7 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 3.4E-28 | 237 | 304 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 24.007 | 240 | 304 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 5.75E-25 | 241 | 304 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.0E-35 | 245 | 303 | IPR003657 | WRKY domain |
Pfam | PF03106 | 4.7E-25 | 246 | 301 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 1.0E-36 | 396 | 471 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 3.79E-29 | 403 | 471 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 38.056 | 406 | 471 | IPR003657 | WRKY domain |
SMART | SM00774 | 2.4E-37 | 411 | 470 | IPR003657 | WRKY domain |
Pfam | PF03106 | 6.4E-25 | 412 | 469 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Plant Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PO Term | PO Category | PO Description | ||||
PO:0006310 | anatomy | tassel floret | ||||
PO:0006339 | anatomy | juvenile vascular leaf | ||||
PO:0006340 | anatomy | adult vascular leaf | ||||
PO:0009025 | anatomy | vascular leaf | ||||
PO:0009066 | anatomy | anther | ||||
PO:0020040 | anatomy | leaf base | ||||
PO:0025142 | anatomy | leaf tip | ||||
PO:0001007 | developmental stage | pollen development stage | ||||
PO:0001052 | developmental stage | vascular leaf expansion stage | ||||
PO:0001053 | developmental stage | vascular leaf post-expansion stage | ||||
PO:0007001 | developmental stage | early whole plant fruit ripening stage | ||||
PO:0007101 | developmental stage | LP.09 nine leaves visible stage | ||||
PO:0007106 | developmental stage | LP.03 three leaves visible stage |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 593 aa Download sequence Send to blast |
MTTSSSGSIE APANSRPGSF AFASTSTSTS TSFTDMLGGS TDAAGGASRY KAMTPPSLPL 60 SPSSFFSNNP GGLNPADFLD SPALFSSSCS GARCRAAHVP GNANALCTFQ IFTSPTTNAF 120 ASQQFSWLAT SGAEQSGKDE RRPSSYPDFS FQTAPTTEEA VRTTTTFQPP IPAASLGEEA 180 YRSQQQQPWA YQQQQPGMDA GSSQQAAPYG EPFQAASSDA ATMAPHVPAS GGYSHQAQQS 240 QRQSSDDGYN WRKYGQKQMK GSENPRSYYK CTFPGCPTKK KVERSLDGQI TEIVYRGTHN 300 HAKPQNTRRN SSAAAQLLQS GGGDASEHSF GGMLGTPVAT PENSSASFGD EEAGVGSPRA 360 GGNAGGDEDE PDSKRWRKDG DGVGEGISMA ANRTVREPRV VVQTMSDIDI LDDGYRWRKY 420 GQKVVKGNPN PRSYYKCTTP GCPVRKHVER ACHDLRAVIT TYEGKHNHDV PAARGSAALY 480 RPAPPPGDNA GHYLGGAAGA AQTGMAYQLA GQQYGFGGQL GSFGLSGGAP AQSSGPSGSL 540 ALSSGFDNPM PMGSLYMSQS QQQGQHDAMH APRAKEEPRE EDMFFQQSMV YTD |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 6e-37 | 246 | 472 | 8 | 78 | Probable WRKY transcription factor 4 |
2lex_A | 6e-37 | 246 | 472 | 8 | 78 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Zm.79558 | 0.0 | endosperm |
Expression -- Microarray ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | ID | |||||
Expression Atlas | GRMZM2G036703 |
Expression -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: In dry seeds, expressed in aleurone cells and embryos. Levels drop rapidly but transiently in the embryos of imbibed seeds. {ECO:0000250|UniProtKB:Q6IEQ7}. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in aleurone cells. Mostly expressed in aleurone layers and leaves, and, to a lower extent, in roots, panicles and embryos. {ECO:0000250|UniProtKB:Q6IEQ7}. |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription repressor (By similarity). Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Negative regulator of both gibberellic acid (GA) and abscisic acid (ABA) signaling in aleurone cells, probably by interfering with GAM1, via the specific repression of GA- and ABA-induced promoters (By similarity). {ECO:0000250|UniProtKB:Q6IEQ7, ECO:0000250|UniProtKB:Q6QHD1}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | GRMZM2G036703_P01 |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Induced by abscisic acid (ABA) in aleurone cells, embryos, roots and leaves (PubMed:25110688). Slightly down-regulated by gibberellic acid (GA) (By similarity). Accumulates in response to jasmonic acid (MeJA) (PubMed:16919842). {ECO:0000250|UniProtKB:Q6IEQ7, ECO:0000269|PubMed:16919842, ECO:0000269|PubMed:25110688}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | BT053994 | 0.0 | BT053994.1 Zea mays full-length cDNA clone ZM_BFc0103O21 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_008657109.1 | 0.0 | WRKY transcription factor WRKY24 | ||||
Swissprot | Q6B6R4 | 0.0 | WRK24_ORYSI; WRKY transcription factor WRKY24 | ||||
TrEMBL | K7V3U5 | 0.0 | K7V3U5_MAIZE; Putative WRKY DNA-binding domain superfamily protein | ||||
STRING | GRMZM2G036703_P01 | 0.0 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2992 | 36 | 87 | Representative plant | OGRP14 | 17 | 875 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G38470.1 | 3e-96 | WRKY DNA-binding protein 33 |
Link Out ? help Back to Top | |
---|---|
Phytozome | GRMZM2G036703_P01 |
Publications ? help Back to Top | |||
---|---|---|---|
|