PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G034421_P01 | ||||||||
Common Name | LOC103635796, ZEAMMB73_148386 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | WRKY | ||||||||
Protein Properties | Length: 228aa MW: 25360.5 Da PI: 7.6631 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 57.6 | 2.5e-18 | 134 | 195 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSS.TTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaed.pkvveitYegeHnhe 59 +D ++WrKYG K++ se+pr YY+C ++ +Cp+kk v+++++ p ++ +t +eH+++ GRMZM2G034421_P01 134 NDRFHWRKYGEKNILYSEYPRLYYKCGYSddhKCPAKKYVQQQSNSyPPIFLVTLINEHTCD 195 79*************************998899*******987654389**********996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 1.6E-19 | 125 | 195 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 6.67E-19 | 128 | 195 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 14.653 | 128 | 197 | IPR003657 | WRKY domain |
SMART | SM00774 | 3.5E-26 | 133 | 196 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.4E-19 | 134 | 195 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 228 aa Download sequence Send to blast |
MPLSPPPPSS SPRQAAIQEL RRGTQLAELL RQQVELIPEP NRRHAAAVNV GEISMAMESS 60 LSILQSQMEH PFSEPEVMAA ALTAHSDGGT SGERNGGPVA RTRKVRVRHR PGRGRPAAGD 120 ELPIKEILTE APENDRFHWR KYGEKNILYS EYPRLYYKCG YSDDHKCPAK KYVQQQSNSY 180 PPIFLVTLIN EHTCDALFRD DEPIISSSSS GSSQVLDFTK ASLSSPLH |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G034421 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G034421_P01 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008656396.1 | 1e-169 | probable WRKY transcription factor 62 | ||||
TrEMBL | K7V4I1 | 1e-168 | K7V4I1_MAIZE; Putative WRKY DNA-binding domain superfamily protein | ||||
STRING | GRMZM2G034421_P01 | 1e-169 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP9993 | 29 | 44 | Representative plant | OGRP14271 | 4 | 4 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G66600.1 | 5e-15 | ABA overly sensitive mutant 3 |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G034421_P01 |
Entrez Gene | 103635796 |