PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | AT1G66600.1 | ||||||||
Common Name | ABO3, ATWRKY63, T12I7.5, WRKY63 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
|
||||||||
Family | WRKY | ||||||||
Protein Properties | Length: 241aa MW: 27378.8 Da PI: 5.8839 | ||||||||
Description | ABA overly sensitive mutant 3 | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 67.9 | 1.5e-21 | 102 | 163 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 ldDg++WrKYGqK++k s + r YYrC++a +C ++k+v+ ++ p v +tY g+H+++ AT1G66600.1 102 LDDGFTWRKYGQKTIKTSLYQRCYYRCAYAkdqNCYATKRVQMIQDSPPVYRTTYLGQHTCK 163 59***************************98999**************************97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50811 | 18.372 | 97 | 165 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 3.0E-22 | 100 | 163 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 2.88E-23 | 100 | 163 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.3E-33 | 102 | 164 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.4E-22 | 103 | 163 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009738 | Biological Process | abscisic acid-activated signaling pathway | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Plant Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PO Term | PO Category | PO Description | ||||
PO:0000003 | anatomy | whole plant | ||||
PO:0000293 | anatomy | guard cell | ||||
PO:0009005 | anatomy | root | ||||
PO:0009025 | anatomy | vascular leaf | ||||
PO:0009046 | anatomy | flower | ||||
PO:0009047 | anatomy | stem | ||||
PO:0007131 | developmental stage | seedling development stage |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 241 aa Download sequence Send to blast |
MFSNIDHKAV AALLHGQGCA NILKTVLDNC KVSSVSTEPL INTILDSFSL ALSSVNSPNR 60 QPHHESSSRD MAGLVPQRSS KKKICGVKGL EIYRDDSPNP RLDDGFTWRK YGQKTIKTSL 120 YQRCYYRCAY AKDQNCYATK RVQMIQDSPP VYRTTYLGQH TCKAFGVHDN TYGSEMINFD 180 QVVSESVMRQ LATIGEQAVL MEDEANHIMN QEYDINDYLV DDEVFWGNEF PLFSSEDLML 240 F |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6ir8_A | 1e-16 | 102 | 163 | 8 | 69 | OsWRKY45 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
At.28325 | 0.0 | leaf |
Expression -- Microarray ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | ID | E-value | ||||
Genevisible | 256364_at | 3e-51 | ||||
Expression Atlas | AT1G66600 | - | ||||
AtGenExpress | AT1G66600 | - |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
TAIR | A member of WRKY Transcription Factor; Group III. Involved in the regulation of plant responses to ABA and drought stress. | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. |
Function -- GeneRIF ? help Back to Top | ||||||
---|---|---|---|---|---|---|
|
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00066 | PBM | 25215497 | Download |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | AT1G66600.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Regulation -- ATRM (Manually Curated Target Genes) ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Target Gene (A: Activate/R: Repress) | |||||
ATRM | AT2G14610(R) |
Regulation -- Hormone ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hormone | |||||
AHD | abscisic acid |
Phenotype -- Mutation ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | ID | |||||
T-DNA Express | AT1G66600 |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AF452172 | 0.0 | AF452172.1 Arabidopsis thaliana WRKY transcription factor 63 (WRKY63) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | NP_176833.1 | 0.0 | ABA overly sensitive mutant 3 | ||||
Swissprot | Q9C6H5 | 0.0 | WRK63_ARATH; Probable WRKY transcription factor 63 | ||||
TrEMBL | A0A384L7K9 | 0.0 | A0A384L7K9_ARATH; WRKY63 | ||||
TrEMBL | C0SV19 | 0.0 | C0SV19_ARATH; Uncharacterized protein At1g66600 (Fragment) | ||||
STRING | AT1G66600.1 | 0.0 | (Arabidopsis thaliana) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5609 | 18 | 47 | Representative plant | OGRP14 | 17 | 875 |
Link Out ? help Back to Top | |
---|---|
Phytozome | AT1G66600.1 |
Entrez Gene | 842978 |
iHOP | AT1G66600 |
wikigenes | AT1G66600 |