PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G033138_P03 | ||||||||
Common Name | LOC100275240 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | HB-PHD | ||||||||
Protein Properties | Length: 527aa MW: 59935.6 Da PI: 8.134 | ||||||||
Description | HB-PHD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 27.6 | 4.9e-09 | 441 | 484 | 9 | 52 |
HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHH CS Homeobox 9 keqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrR 52 + +e+L ++F++n p ++ +e L+++lg++ +++ WF+N R GRMZM2G033138_P03 441 PAAVEVLRRAFAENELPPRDVKENLSRELGISFEKIDKWFKNTR 484 67799*************************************99 PP | |||||||
2 | PHD | 27.9 | 5.3e-10 | 187 | 241 | 1 | 50 |
SBTTTSS..TCTTSSEEEBSS.SSSEEETTTSTSSSSHHSHHSS..TBSSHHHHT CS PHD 1 rCkvCgk..sdeegelvlCdg.CkewfHlkClglkleseekpeg..ewlCeeCke 50 +C+ C++ s ++++++C+g Ck+++H kCl+++l+++ p + wlC+ C + GRMZM2G033138_P03 187 MCSTCKSheSFPSNKIIFCKGpCKRACHEKCLEPPLNKSVLPTSshGWLCKFCLC 241 6******65555*******977***************999999999*******86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57903 | 5.76E-11 | 180 | 244 | IPR011011 | Zinc finger, FYVE/PHD-type |
Gene3D | G3DSA:3.30.40.10 | 1.8E-10 | 184 | 242 | IPR013083 | Zinc finger, RING/FYVE/PHD-type |
PROSITE profile | PS50016 | 9.623 | 185 | 242 | IPR019787 | Zinc finger, PHD-finger |
SMART | SM00249 | 0.0018 | 187 | 240 | IPR001965 | Zinc finger, PHD-type |
Pfam | PF00628 | 1.5E-7 | 187 | 241 | IPR019787 | Zinc finger, PHD-finger |
Gene3D | G3DSA:1.10.10.60 | 4.1E-11 | 426 | 484 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 5.99E-10 | 427 | 492 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 4.1E-9 | 430 | 494 | IPR001356 | Homeobox domain |
PROSITE profile | PS50071 | 11.855 | 430 | 490 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.37E-8 | 434 | 494 | No hit | No description |
Pfam | PF00046 | 1.4E-6 | 441 | 484 | IPR001356 | Homeobox domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 527 aa Download sequence Send to blast |
MHSSENKLGW NETSMGLVPV PKRPARPDAS HQCKSDSFMK RSPRKVRNAT LAKSIKSKYH 60 YSPLKQRKGS DSVPGKIVTG LTARKKKKRK IQITDEATRL ERRARYFLIK IKLEQNLLDA 120 YSGDGWNGQS REKIKPEKEL QRARKQIIKC KIAIRDIIRQ LDLYTSTGSV DDPLMPTDQS 180 TNPEHTMCST CKSHESFPSN KIIFCKGPCK RACHEKCLEP PLNKSVLPTS SHGWLCKFCL 240 CKVRILETIN AHLGTSFTVK CHFEDIFKET TELIDSEDAL DEDWLSEYSG DEDYDPDENE 300 ASGDCMDSGE KIMSDDSNGS GSPLYSPNDD IPDFISADLN VVEGFCHTNL DLGIDAVEDD 360 FAQILTYQRP RRDVDYRRLN EEMFGKITGN EEQSEDEDWG HERRKKRTHS GVAGDNSVGF 420 LNVISDEKSQ KKGRKLFRIP PAAVEVLRRA FAENELPPRD VKENLSRELG ISFEKIDKWF 480 KNTRCAALRD RKAEGNSHNT APSKSSKNKG KAGISDWKEW SCYWSLQ |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 83 | 88 | RKKKKR |
2 | 83 | 89 | RKKKKRK |
3 | 84 | 89 | KKKKRK |
4 | 404 | 408 | KKRTH |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Zm.28845 | 0.0 | cell culture| ear| embryo| endosperm| meristem| ovary| root| shoot |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G033138 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G033138_P03 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU948954 | 0.0 | EU948954.1 Zea mays clone 391409 mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001357958.1 | 0.0 | uncharacterized protein LOC100275240 isoform 1 | ||||
TrEMBL | C5XUM8 | 0.0 | C5XUM8_SORBI; Uncharacterized protein | ||||
STRING | GRMZM2G033138_P01 | 0.0 | (Zea mays) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G29940.2 | 7e-89 | pathogenesis related homeodomain protein A |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G033138_P03 |