PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G029292_P03 | ||||||||
Common Name | ZEAMMB73_508453, Zm.33467 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | WRKY | ||||||||
Protein Properties | Length: 242aa MW: 27416.6 Da PI: 5.9791 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 78.2 | 9.2e-25 | 53 | 113 | 2 | 58 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-.SSSTTEEEEEEES--SS CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkvers.aedpkvveitYegeHnh 58 +Dgy+WrKYGqK+++gs++pr YYrCt++ gCp++k+ve++ ++dp ++ ++Y++eH++ GRMZM2G029292_P03 53 HDGYQWRKYGQKMIRGSTYPRCYYRCTYHqdhGCPATKHVEQNnSQDPPLFRVIYTNEHTC 113 7***************************98999*******986268*************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 6.7E-25 | 37 | 114 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 4.05E-22 | 46 | 113 | IPR003657 | WRKY domain |
SMART | SM00774 | 2.8E-35 | 52 | 115 | IPR003657 | WRKY domain |
Pfam | PF03106 | 5.7E-25 | 54 | 113 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 20.357 | 54 | 111 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 242 aa Download sequence Send to blast |
MAKRGDYMDS SCDCSNGRTP KRLVQDCSSY AQAHAKKKVR ISTRTEYTYA PYHDGYQWRK 60 YGQKMIRGST YPRCYYRCTY HQDHGCPATK HVEQNNSQDP PLFRVIYTNE HTCCSTHVSD 120 YMASSIYIQQ IADASLREAE VEIPSQLAQC FGGHELIEEE NDAIISSLLT AISGCDVATL 180 DGGQHAAIEE NTPARMPRSR IEASPSISPV LLHASSDKLK TDFIEPLETQ WFELLDLGWF 240 IE |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 1e-13 | 40 | 111 | 2 | 69 | WRKY transcription factor 1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Zm.33467 | 0.0 | embryo| tassel |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G029292 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G029292_P03 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU956670 | 0.0 | EU956670.1 Zea mays clone 1570252 WRKY22 - superfamily of TFs having WRKY and zinc finger domains mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001147816.1 | 1e-178 | WRKY22 - superfamily of TFs having WRKY and zinc finger domains | ||||
TrEMBL | B6SVA5 | 1e-177 | B6SVA5_MAIZE; WRKY22-superfamily of TFs having WRKY and zinc finger domains | ||||
STRING | GRMZM2G029292_P03 | 0.0 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP11814 | 31 | 39 | Representative plant | OGRP15344 | 3 | 4 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G22570.1 | 9e-20 | WRKY DNA-binding protein 38 |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G029292_P03 |