PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G029292_P02
Common NameZEAMMB73_508453, Zm.33467
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family WRKY
Protein Properties Length: 237aa    MW: 26399.6 Da    PI: 4.8512
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G029292_P02genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY33.48.9e-11671082158
                        -EEEEEE-ST...T---EEEEEE-.SSSTTEEEEEEES--SS CS
               WRKY  21 prsYYrCtsa...gCpvkkkvers.aedpkvveitYegeHnh 58 
                         r YYrCt++   gCp++k+ve++ ++dp ++ ++Y++eH++
  GRMZM2G029292_P02  67 QRCYYRCTYHqdhGCPATKHVEQNnSQDPPLFRVIYTNEHTC 108
                        699******98999*******986268*************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007741.8E-962110IPR003657WRKY domain
PfamPF031061.5E-1266108IPR003657WRKY domain
SuperFamilySSF1182904.05E-966108IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.2E-1067109IPR003657WRKY domain
PROSITE profilePS508119.45468106IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 237 aa     Download sequence    Send to blast
MSRGIRPIPS ALGMQVNERF LDLACTHAYR LRRCHAVSSF AFENNEFGRI CLATRDSLGM  60
DGSGGSQRCY YRCTYHQDHG CPATKHVEQN NSQDPPLFRV IYTNEHTCCS THVSDYMASS  120
IYIQQIADAS LREAEVEIPS QLAQCFGGHE LIEEENDAII SSLLTAISGC DVATLDGGQH  180
AAIEENTPAR MPRSRIEASP SISPVLLHAS SDKLKTDFIE PLETQWFELL DLGWFIE
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.334670.0embryo| tassel
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G029292
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G029292_P02
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9566700.0EU956670.1 Zea mays clone 1570252 WRKY22 - superfamily of TFs having WRKY and zinc finger domains mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001147816.11e-118WRKY22 - superfamily of TFs having WRKY and zinc finger domains
TrEMBLK7V3X11e-177K7V3X1_MAIZE; Putative WRKY DNA-binding domain superfamily protein
STRINGGRMZM2G029292_P031e-123(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22570.11e-10WRKY DNA-binding protein 38