PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G029282_P01
Common NameLOC103636552, ZEAMMB73_929609
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family WRKY
Protein Properties Length: 376aa    MW: 40703.6 Da    PI: 6.5043
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G029282_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY65.77.2e-21118180259
                        --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTT....EEEEEEES--SS- CS
               WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpk....vveitYegeHnhe 59 
                        +Dgy WrKYGqK++++ +f r Y+rC+   +C++kkkv+++++d++    ++e+tY +eH+++
  GRMZM2G029282_P01 118 KDGYVWRKYGQKNIQNCNFVRYYFRCSRDrRCEAKKKVQQQDDDGShlppMFEVTYLNEHTCH 180
                        7**************************999*************986455589*********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.6E-23106181IPR003657WRKY domain
SuperFamilySSF1182906.8E-20113180IPR003657WRKY domain
SMARTSM007742.1E-25117181IPR003657WRKY domain
PfamPF031061.7E-21118180IPR003657WRKY domain
PROSITE profilePS5081113.712119182IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 376 aa     Download sequence    Send to blast
MATDQDAKLF DVLAGGYHLT TQLQALLGGR RPLDGIGQQE AMAFSQELSR VFKVSMSMLN  60
GSAVAGAKTA PAVRPGAIVQ AVAKDKRARS DSREVVTPAR RSREDGVTRK EITASPYKDG  120
YVWRKYGQKN IQNCNFVRYY FRCSRDRRCE AKKKVQQQDD DGSHLPPMFE VTYLNEHTCH  180
ALRATTTANG DAAVPVPVAA SPPTTNRRWY YRDDAARDDD GGLQFDLSSF PRMSGPGGAG  240
GSAQENQTIV SCLADVIRGA APSPWSPVAA DASDAGAASY GPAPMQMQMM QASGSGHSAS  300
VAQDGGATMM TTMIGTDDTD FCCWDPSLVG EADHQMMDED HRDMLHVVDV ARLADTVWPR  360
HTTPAGAWHC PLCPQI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A1e-111191791068OsWRKY45
Search in ModeBase
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G029282
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G029282_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020398834.10.0uncharacterized protein LOC103636552
TrEMBLA0A1D6G9520.0A0A1D6G952_MAIZE; Putative WRKY DNA-binding domain superfamily protein
STRINGGRMZM2G029282_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP132432632
Representative plantOGRP1688833
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56400.12e-17WRKY DNA-binding protein 70