PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G028969_P01 | ||||||||
Common Name | EREB185, LOC103648466 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | ERF | ||||||||
Protein Properties | Length: 252aa MW: 26853.8 Da PI: 4.5826 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 56.8 | 5.4e-18 | 60 | 109 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GVr + +g+Wv+eIr+p++ + r++lg+f+ +e+Aa+a++aa+ +++g GRMZM2G028969_P01 60 TYRGVRMRA-WGKWVSEIREPRK---KSRIWLGTFDNPEMAARAHDAAAVAIKG 109 69****998.**********843...6**********************98877 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 1.8E-11 | 60 | 108 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 6.6E-35 | 60 | 123 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.68E-21 | 60 | 118 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 1.6E-31 | 60 | 118 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 22.313 | 60 | 117 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 7.9E-10 | 61 | 72 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 3.07E-21 | 61 | 119 | No hit | No description |
PRINTS | PR00367 | 7.9E-10 | 83 | 99 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 252 aa Download sequence Send to blast |
MEHEQVSPQV SDGCTCTCTY SSSSNATSGS LNGSSSPTSS DDSGGKGTNK RPRRDLKHPT 60 YRGVRMRAWG KWVSEIREPR KKSRIWLGTF DNPEMAARAH DAAAVAIKGR AAHLNFPDLA 120 HDLPRAASAA PKDVQAAAAL AAATVPAPSP VVAPSCGHGH GLDDDADTET EEDLPPQQAM 180 PECESGNQQA QLQLACADIG VGLGYTFLDV PDGLLDFGYM LSPLPLPAYC GSPWDDIADD 240 LCFEEPLLLW EH |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 3e-18 | 42 | 117 | 2 | 72 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G028969 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G028969_P01 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KJ727864 | 0.0 | KJ727864.1 Zea mays clone pUT5956 AP2-EREBP transcription factor (EREB185) gene, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020404859.1 | 1e-103 | ethylene-responsive transcription factor ERF034, partial | ||||
TrEMBL | A0A060D211 | 0.0 | A0A060D211_MAIZE; AP2-EREBP transcription factor (Fragment) | ||||
STRING | GRMZM2G028969_P01 | 0.0 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP159 | 35 | 354 | Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G11590.1 | 3e-28 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G028969_P01 |
Entrez Gene | 103648466 |