PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G028386_P01
Common NameLOC103643169, Zm.117609
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family ERF
Protein Properties Length: 359aa    MW: 38275.8 Da    PI: 6.9188
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G028386_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.61.7e-1983133155
                AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                        + ++GVr++  +g+WvAeIr+p   + r +r +lg+fg+a eAa+a++aa++ l+g
  GRMZM2G028386_P01  83 CPFRGVRQRT-WGKWVAEIREP---N-RgARLWLGTFGSALEAARAYDAAARTLYG 133
                        679****999.**********8...3.35**********************99876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103220.53484141IPR001471AP2/ERF domain
SMARTSM003807.0E-3284147IPR001471AP2/ERF domain
PfamPF008473.5E-1385133IPR001471AP2/ERF domain
SuperFamilySSF541713.07E-1985141IPR016177DNA-binding domain
CDDcd000181.03E-1685141No hitNo description
PRINTSPR003679.9E-98596IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.1E-2785141IPR001471AP2/ERF domain
PRINTSPR003679.9E-9107123IPR001471AP2/ERF domain
Gene3DG3DSA:1.10.437.102.6E-4274328No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0006340anatomyadult vascular leaf
PO:0006354anatomyear floret
PO:0006505anatomycentral spike of ear inflorescence
PO:0009001anatomyfruit
PO:0009009anatomyplant embryo
PO:0009025anatomyvascular leaf
PO:0009074anatomystyle
PO:0009084anatomypericarp
PO:0009089anatomyendosperm
PO:0020040anatomyleaf base
PO:0020126anatomytassel inflorescence
PO:0020142anatomystem internode
PO:0020148anatomyshoot apical meristem
PO:0025142anatomyleaf tip
PO:0001007developmental stagepollen development stage
PO:0001052developmental stagevascular leaf expansion stage
PO:0001053developmental stagevascular leaf post-expansion stage
PO:0001083developmental stageinflorescence development stage
PO:0001095developmental stageplant embryo true leaf formation stage
PO:0007001developmental stageearly whole plant fruit ripening stage
PO:0007003developmental stageIL.03 full inflorescence length reached stage
PO:0007006developmental stageIL.00 inflorescence just visible stage
PO:0007016developmental stagewhole plant flowering stage
PO:0007031developmental stagemid whole plant fruit ripening stage
PO:0007065developmental stageLP.05 five leaves visible stage
PO:0007072developmental stageLP.18 eighteen leaves visible stage
PO:0007101developmental stageLP.09 nine leaves visible stage
PO:0007104developmental stageLP.15 fifteen leaves visible stage
PO:0007106developmental stageLP.03 three leaves visible stage
PO:0007116developmental stageLP.11 eleven leaves visible stage
PO:0007123developmental stageLP.06 six leaves visible stage
PO:0007633developmental stageendosperm development stage
Sequence ? help Back to Top
Protein Sequence    Length: 359 aa     Download sequence    Send to blast
MDRVPPPVSM QVAAMQRHQQ QQQFVHHLQQ VHQQGTQHEQ PPPPHQNGSS SSGRTGGGRK  60
CCPLRRSRKG CMKGKGGPDN QQCPFRGVRQ RTWGKWVAEI REPNRGARLW LGTFGSALEA  120
ARAYDAAART LYGDCARLNL QLVPPSAAAA AAGGGGPAVV ASPSPDTVAG PAAAAGGGGH  180
NCHHQYLQQQ HAMAAPMMMM HSSCCSADGS SSNSDSISNS CSSPVTTAAS PAYSHHQTMF  240
QTPALQPSCG AMTMAAAAPH VQGFHVGDDD TTTAMAMHRH QQMMRELAEA PLHQEADDFE  300
DFVTRLPKAE DFGLQGFQEV APEVFDDAAG IWDHAAAWEP PTMMIDSGAQ PQQQLVVPL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A3e-1385142361ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
5wx9_A4e-13811401171Ethylene-responsive transcription factor ERF096
Search in ModeBase
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G028386
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G028386_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9520580.0EU952058.1 Zea mays clone 1066007 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008664551.20.0ethylene-responsive transcription factor ABI4
TrEMBLA0A1D6KLT10.0A0A1D6KLT1_MAIZE; Dehydration-responsive element-binding protein 2G
STRINGGRMZM2G028386_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP55103454
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40350.14e-30ERF family protein