PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G026833_P02
Common Nameglk1, Glk1, ZEAMMB73_644019
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family G2-like
Protein Properties Length: 475aa    MW: 50395.7 Da    PI: 5.0918
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G026833_P02genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like863.8e-27193247156
            G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                        k++++WtpeLH+rFv+ave+L G++kA+P++ile+m++++Lt+++++SHLQkYR++
  GRMZM2G026833_P02 193 KAKVDWTPELHRRFVQAVEEL-GIDKAVPSRILEIMGIDSLTRHNIASHLQKYRSH 247
                        6799*****************.********************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.996190249IPR017930Myb domain
Gene3DG3DSA:1.10.10.609.2E-27191250IPR009057Homeodomain-like
SuperFamilySSF466896.09E-18191250IPR009057Homeodomain-like
TIGRFAMsTIGR015573.5E-26193247IPR006447Myb domain, plants
PfamPF002495.8E-8196245IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010638Biological Processpositive regulation of organelle organization
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 475 aa     Download sequence    Send to blast
MLAVSPSPVR CADAEECGGG GASKEMEETA VGPVSDSDLD FDFTVDDIDF GDFFLRLDDG  60
DDALPGLEVD PAEIVFADFE AIATAGGDGG VTDQEVPSVL PFADAAHIGA VDPCCGVLGE  120
DNDAACADVE EGKGECDHAD EVAAAGNNNS DSGEAGCGGA FAGEKSPSST ASSSQEAESR  180
RKVSKKHSQG KKKAKVDWTP ELHRRFVQAV EELGIDKAVP SRILEIMGID SLTRHNIASH  240
LQKYRSHRKH MLAREVEAAT WTTHRRPMYA APSGAVKRPD SNAWTVPTIG FPPPAGTPPR  300
PVQHFGRPLH VWGHPSPTPA VESPRVPMWP RHLAPRAPPP PPWAPPPPAD PASFWHHAYM  360
RGPAAHMPDQ VAVTPCVAVP MAAARFPAPH VRGSLPWPPP MYRPLVPPAL AGKSQQDALF  420
QLQIQPSSES IDAAIGDVLT KPWLPLPLGL KPPSVDSVMG ELQRQGVANV PQACG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A6e-17190245257ARR10-B
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.6550.0meristem
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G026833
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in leaves. {ECO:0000269|PubMed:11340194}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional activator that promotes chloroplast development. Acts as an activator of nuclear photosynthetic genes involved in chlorophyll biosynthesis, light harvesting, and electron transport. {ECO:0000269|PubMed:19808806}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G026833_P02
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By light. {ECO:0000269|PubMed:11340194}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF3185800.0AF318580.1 Zea mays putative transcription factor ZmGLK1 (Glk1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001105018.10.0G2-like 1
SwissprotQ5Z5I41e-153GLK1_ORYSJ; Probable transcription factor GLK1
TrEMBLQ93XP60.0Q93XP6_MAIZE; Putative transcription factor ZmGLK1
STRINGGRMZM2G026833_P010.0(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20570.13e-50GBF's pro-rich region-interacting factor 1
Publications ? help Back to Top
  1. Rossini L,Cribb L,Martin DJ,Langdale JA
    The maize golden2 gene defines a novel class of transcriptional regulators in plants.
    Plant Cell, 2001. 13(5): p. 1231-44
    [PMID:11340194]
  2. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  3. Zhang Y, et al.
    A highly efficient rice green tissue protoplast system for transient gene expression and studying light/chloroplast-related processes.
    Plant Methods, 2011. 7(1): p. 30
    [PMID:21961694]