PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G026833_P01
Common Nameglk1, ZEAMMB73_644019
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family G2-like
Protein Properties Length: 476aa    MW: 50523.8 Da    PI: 5.0918
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G026833_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like863.8e-27193247156
            G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                        k++++WtpeLH+rFv+ave+L G++kA+P++ile+m++++Lt+++++SHLQkYR++
  GRMZM2G026833_P01 193 KAKVDWTPELHRRFVQAVEEL-GIDKAVPSRILEIMGIDSLTRHNIASHLQKYRSH 247
                        6799*****************.********************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.996190249IPR017930Myb domain
Gene3DG3DSA:1.10.10.609.3E-27191250IPR009057Homeodomain-like
SuperFamilySSF466896.09E-18191250IPR009057Homeodomain-like
TIGRFAMsTIGR015573.5E-26193247IPR006447Myb domain, plants
PfamPF002495.9E-8196245IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010638Biological Processpositive regulation of organelle organization
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000037anatomyshoot apex
PO:0006339anatomyjuvenile vascular leaf
PO:0006340anatomyadult vascular leaf
PO:0006505anatomycentral spike of ear inflorescence
PO:0009001anatomyfruit
PO:0009025anatomyvascular leaf
PO:0009089anatomyendosperm
PO:0020040anatomyleaf base
PO:0020104anatomyleaf sheath
PO:0020142anatomystem internode
PO:0020148anatomyshoot apical meristem
PO:0001052developmental stagevascular leaf expansion stage
PO:0001180developmental stageplant proembryo stage
PO:0007001developmental stageearly whole plant fruit ripening stage
PO:0007016developmental stagewhole plant flowering stage
PO:0007032developmental stagewhole plant fruit formation stage up to 10%
PO:0007063developmental stageLP.07 seven leaves visible stage
PO:0007065developmental stageLP.05 five leaves visible stage
PO:0007123developmental stageLP.06 six leaves visible stage
PO:0007633developmental stageendosperm development stage
PO:0021004developmental stageinflorescence initiation stage
Sequence ? help Back to Top
Protein Sequence    Length: 476 aa     Download sequence    Send to blast
MLAVSPSPVR CADAEECGGG GASKEMEETA VGPVSDSDLD FDFTVDDIDF GDFFLRLDDG  60
DDALPGLEVD PAEIVFADFE AIATAGGDGG VTDQEVPSVL PFADAAHIGA VDPCCGVLGE  120
DNDAACADVE EGKGECDHAD EVAAAGNNNS DSGEAGCGGA FAGEKSPSST ASSSQEAESR  180
RKVSKKHSQG KKKAKVDWTP ELHRRFVQAV EELGIDKAVP SRILEIMGID SLTRHNIASH  240
LQKYRSHRKH MLAREVEAAT WTTHRRPMYA APSGAVKRPD SNAWTVPTIG FPPPAGTPPR  300
PVQHFGRPLH VWGHPSPTPA VESPRVPMWP RHLAPRAPPP PPWAPPPPAD PASFWHHAYM  360
RQGPAAHMPD QVAVTPCVAV PMAAARFPAP HVRGSLPWPP PMYRPLVPPA LAGKSQQDAL  420
FQLQIQPSSE SIDAAIGDVL TKPWLPLPLG LKPPSVDSVM GELQRQGVAN VPQACG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A6e-17190245257ARR10-B
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.6550.0meristem
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G026833
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in leaves. {ECO:0000269|PubMed:11340194}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional activator that promotes chloroplast development. Acts as an activator of nuclear photosynthetic genes involved in chlorophyll biosynthesis, light harvesting, and electron transport. {ECO:0000269|PubMed:19808806}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G026833_P01
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By light. {ECO:0000269|PubMed:11340194}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0552200.0BT055220.1 Zea mays full-length cDNA clone ZM_BFc0139J21 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008659013.10.0G2-like 1 isoform X1
SwissprotQ5Z5I41e-152GLK1_ORYSJ; Probable transcription factor GLK1
TrEMBLK7W4V30.0K7W4V3_MAIZE; G2-like1
STRINGGRMZM2G026833_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP24153886
Representative plantOGRP28401529
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20570.12e-50GBF's pro-rich region-interacting factor 1
Publications ? help Back to Top
  1. Rossini L,Cribb L,Martin DJ,Langdale JA
    The maize golden2 gene defines a novel class of transcriptional regulators in plants.
    Plant Cell, 2001. 13(5): p. 1231-44
    [PMID:11340194]
  2. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  3. Zhang Y, et al.
    A highly efficient rice green tissue protoplast system for transient gene expression and studying light/chloroplast-related processes.
    Plant Methods, 2011. 7(1): p. 30
    [PMID:21961694]