PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G026223_P05 | ||||||||
Common Name | LOC100279630 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 200aa MW: 22477.9 Da PI: 9.7054 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 92.4 | 2.1e-29 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krien rqvtfskRrng+lKKA+ELSvLCdaeva+++fs++gklye++s GRMZM2G026223_P05 9 KRIENPASRQVTFSKRRNGLLKKAFELSVLCDAEVALVVFSPRGKLYEFAS 59 79***********************************************86 PP | |||||||
2 | K-box | 49.5 | 1.8e-17 | 78 | 142 | 6 | 70 |
K-box 6 gksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKn 70 ++++++++ e+ + +++ L k++e L+ +R+llGe Le++s++eL++Le +Leksl iR +K GRMZM2G026223_P05 78 SNKTAHQDIEQVKADAEGLAKKLEALEAYKRKLLGERLEECSFEELHSLEVKLEKSLHCIRGRKC 142 444788999******************************************************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 5.8E-39 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 31.076 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 2.49E-32 | 3 | 81 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.4E-30 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 2.50E-41 | 3 | 75 | No hit | No description |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 3.3E-27 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.4E-30 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.4E-30 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 2.1E-16 | 82 | 142 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 7.883 | 86 | 200 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 200 aa Download sequence Send to blast |
MVRGKTQMKR IENPASRQVT FSKRRNGLLK KAFELSVLCD AEVALVVFSP RGKLYEFASG 60 SAQKTIERYR TYTKDNVSNK TAHQDIEQVK ADAEGLAKKL EALEAYKRKL LGERLEECSF 120 EELHSLEVKL EKSLHCIRGR KCKKQPPPPP PMLMAPPPPP APAAIDHTGP KDVGMDVETE 180 LYIGLPGRDY RSNNKDMTAQ |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3mu6_A | 1e-19 | 3 | 72 | 2 | 71 | Myocyte-specific enhancer factor 2A |
3mu6_B | 1e-19 | 3 | 72 | 2 | 71 | Myocyte-specific enhancer factor 2A |
3mu6_C | 1e-19 | 3 | 72 | 2 | 71 | Myocyte-specific enhancer factor 2A |
3mu6_D | 1e-19 | 3 | 72 | 2 | 71 | Myocyte-specific enhancer factor 2A |
5f28_A | 2e-19 | 1 | 72 | 1 | 72 | MEF2C |
5f28_B | 2e-19 | 1 | 72 | 1 | 72 | MEF2C |
5f28_C | 2e-19 | 1 | 72 | 1 | 72 | MEF2C |
5f28_D | 2e-19 | 1 | 72 | 1 | 72 | MEF2C |
6byy_A | 2e-19 | 1 | 73 | 1 | 73 | MEF2 CHIMERA |
6byy_B | 2e-19 | 1 | 73 | 1 | 73 | MEF2 CHIMERA |
6byy_C | 2e-19 | 1 | 73 | 1 | 73 | MEF2 CHIMERA |
6byy_D | 2e-19 | 1 | 73 | 1 | 73 | MEF2 CHIMERA |
6bz1_A | 2e-19 | 1 | 73 | 1 | 73 | MEF2 CHIMERA |
6bz1_B | 2e-19 | 1 | 73 | 1 | 73 | MEF2 CHIMERA |
6bz1_C | 2e-19 | 1 | 73 | 1 | 73 | MEF2 CHIMERA |
6bz1_D | 2e-19 | 1 | 73 | 1 | 73 | MEF2 CHIMERA |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Zm.96018 | 0.0 | endosperm| meristem| ovary| pollen| shoot |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G026223 |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Low expression in the young panicle continues to decline as the organ mature. {ECO:0000269|PubMed:15144377, ECO:0000269|PubMed:17166135}. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in mature leaves and at low levels in roots and young panicles. {ECO:0000269|PubMed:15144377, ECO:0000269|PubMed:17166135}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor active in flowering time control. May control internode elongation and promote floral transition phase. May act upstream of the floral regulators MADS1, MADS14, MADS15 and MADS18 in the floral induction pathway. {ECO:0000269|PubMed:15144377, ECO:0000269|PubMed:17166135}. |
Function -- GeneRIF ? help Back to Top | ||||||
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G026223_P05 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT054617 | 0.0 | BT054617.1 Zea mays full-length cDNA clone ZM_BFb0029H23 mRNA, complete cds. | |||
GenBank | BT062798 | 0.0 | BT062798.1 Zea mays full-length cDNA clone ZM_BFb0347K21 mRNA, complete cds. | |||
GenBank | EU960774 | 0.0 | EU960774.1 Zea mays clone 228490 MADS-box transcription factor 56 mRNA, complete cds. | |||
GenBank | EU962504 | 0.0 | EU962504.1 Zea mays clone 243238 mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008672806.1 | 1e-147 | putative MADS-box transcription factor family protein isoform X2 | ||||
Swissprot | Q9XJ60 | 2e-95 | MAD50_ORYSJ; MADS-box transcription factor 50 | ||||
TrEMBL | A0A317Y8W8 | 1e-123 | A0A317Y8W8_MAIZE; MADS-box transcription factor 50 | ||||
TrEMBL | B6T709 | 1e-123 | B6T709_MAIZE; Agamous-like6 | ||||
STRING | GRMZM2G026223_P04 | 1e-124 | (Zea mays) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G45660.1 | 2e-62 | AGAMOUS-like 20 |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G026223_P05 |
Entrez Gene | 100279630 |