PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G024973_P01 | ||||||||
Common Name | d9, LOC100127531, Zm.6402 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | GRAS | ||||||||
Protein Properties | Length: 625aa MW: 65742.6 Da PI: 5.0091 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 451.5 | 5.3e-138 | 236 | 621 | 1 | 374 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalkl...fsevsP 89 lv++Ll+cAeav+++++++a+al++++ las++g +m+++aayf eALa+r++r l+p ++ + ++++a+ l f+e +P GRMZM2G024973_P01 236 LVHALLACAEAVQQENFSAADALVKQIPVLASSQGGAMRKVAAYFGEALARRVYR--------LRPAPDG--SLLDAAFADLLhahFYESCP 317 689****************************************************........4444444..34444444433445****** PP GRAS 90 ilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvl 181 +lkf+h+taNqaIlea++g++rvH++Df+i+qG+QWpaLlqaLa Rp+gpps+R+Tgvg+p+++++++l+++g++La+fA++++v+f+++ l GRMZM2G024973_P01 318 YLKFAHFTANQAILEAFAGCRRVHVVDFGIKQGMQWPALLQALALRPGGPPSFRLTGVGPPQPDETDALQQVGWKLAQFAHTIRVDFQYRGL 409 ******************************************************************************************** PP GRAS 182 vakrledleleeLrvkp.......gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysa 266 va +l+dle+ +Lr + E++aVn+v +lhrll+++++l++ vL +v+ ++P++v+vveqea+hns++Fl+rf+e+l+yys+ GRMZM2G024973_P01 410 VAATLADLEPFMLRPEGggdtddePEVIAVNSVCELHRLLAQPGTLDK----VLGTVRAVRPRIVTVVEQEANHNSGTFLDRFTESLHYYST 497 *************555455555579*******************9999....**************************************** PP GRAS 267 lfdsleak...............lpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrk 343 +fdsle +++ + +++++++++lgr+i+n+vacegaer+erhetl +Wr rl+ +GF+pv+l+++a+kqa++ll+ GRMZM2G024973_P01 498 MFDSLEGAgsgsgsgsgsgqptdASPPAGTDQVMSEVYLGRQICNIVACEGAERTERHETLVQWRGRLGGSGFEPVHLGSNAYKQASTLLAL 589 *****88789*********888877888**************************************************************** PP GRAS 344 vk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374 ++ +dgyrvee++g+l+lgW++rpL+++SaWr GRMZM2G024973_P01 590 FAgGDGYRVEEKDGCLTLGWHTRPLIATSAWR 621 *******************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01129 | 9.0E-33 | 37 | 116 | No hit | No description |
Pfam | PF12041 | 1.4E-35 | 37 | 110 | IPR021914 | Transcriptional factor DELLA, N-terminal |
PROSITE profile | PS50985 | 65.634 | 210 | 600 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 1.8E-135 | 236 | 621 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0006310 | anatomy | tassel floret | ||||
PO:0006340 | anatomy | adult vascular leaf | ||||
PO:0006354 | anatomy | ear floret | ||||
PO:0006505 | anatomy | central spike of ear inflorescence | ||||
PO:0009001 | anatomy | fruit | ||||
PO:0009009 | anatomy | plant embryo | ||||
PO:0009025 | anatomy | vascular leaf | ||||
PO:0009054 | anatomy | inflorescence bract | ||||
PO:0009066 | anatomy | anther | ||||
PO:0009074 | anatomy | style | ||||
PO:0009084 | anatomy | pericarp | ||||
PO:0009089 | anatomy | endosperm | ||||
PO:0020040 | anatomy | leaf base | ||||
PO:0020126 | anatomy | tassel inflorescence | ||||
PO:0020127 | anatomy | primary root | ||||
PO:0020136 | anatomy | ear inflorescence | ||||
PO:0020142 | anatomy | stem internode | ||||
PO:0020148 | anatomy | shoot apical meristem | ||||
PO:0025142 | anatomy | leaf tip | ||||
PO:0025287 | anatomy | seedling coleoptile | ||||
PO:0001007 | developmental stage | pollen development stage | ||||
PO:0001009 | developmental stage | D pollen mother cell meiosis stage | ||||
PO:0001052 | developmental stage | vascular leaf expansion stage | ||||
PO:0001053 | developmental stage | vascular leaf post-expansion stage | ||||
PO:0001095 | developmental stage | plant embryo true leaf formation stage | ||||
PO:0001180 | developmental stage | plant proembryo stage | ||||
PO:0007001 | developmental stage | early whole plant fruit ripening stage | ||||
PO:0007003 | developmental stage | IL.03 full inflorescence length reached stage | ||||
PO:0007006 | developmental stage | IL.00 inflorescence just visible stage | ||||
PO:0007015 | developmental stage | radicle emergence stage | ||||
PO:0007016 | developmental stage | whole plant flowering stage | ||||
PO:0007022 | developmental stage | seed imbibition stage | ||||
PO:0007026 | developmental stage | FL.00 first flower(s) open stage | ||||
PO:0007031 | developmental stage | mid whole plant fruit ripening stage | ||||
PO:0007032 | developmental stage | whole plant fruit formation stage up to 10% | ||||
PO:0007045 | developmental stage | coleoptile emergence stage | ||||
PO:0007063 | developmental stage | LP.07 seven leaves visible stage | ||||
PO:0007065 | developmental stage | LP.05 five leaves visible stage | ||||
PO:0007072 | developmental stage | LP.18 eighteen leaves visible stage | ||||
PO:0007101 | developmental stage | LP.09 nine leaves visible stage | ||||
PO:0007104 | developmental stage | LP.15 fifteen leaves visible stage | ||||
PO:0007106 | developmental stage | LP.03 three leaves visible stage | ||||
PO:0007112 | developmental stage | 1 main shoot growth stage | ||||
PO:0007116 | developmental stage | LP.11 eleven leaves visible stage | ||||
PO:0007123 | developmental stage | LP.06 six leaves visible stage | ||||
PO:0007633 | developmental stage | endosperm development stage | ||||
PO:0021004 | developmental stage | inflorescence initiation stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 625 aa Download sequence Send to blast |
MKREYQNAGG NDGYRGSSKD KSMAAAAGAG EQEEEVDELL AALGYKVRSS DMADVAQKLE 60 QLEMAMGMGG ACPTADDGFV SHLATDTVHY NPSDLSSWVE SMLSELNAPP PPLPPATPAP 120 RLASTSSTVT SGAAAGAGYF DLPPAVDSSS STYALKPIPS PVAAASADPS PDSAREPKRM 180 RTGGGSTSSS SSSSSSMDGG RTRSSVVEAA PPATQAANGP AVPVVVVDTQ EAGIRLVHAL 240 LACAEAVQQE NFSAADALVK QIPVLASSQG GAMRKVAAYF GEALARRVYR LRPAPDGSLL 300 DAAFADLLHA HFYESCPYLK FAHFTANQAI LEAFAGCRRV HVVDFGIKQG MQWPALLQAL 360 ALRPGGPPSF RLTGVGPPQP DETDALQQVG WKLAQFAHTI RVDFQYRGLV AATLADLEPF 420 MLRPEGGGDT DDEPEVIAVN SVCELHRLLA QPGTLDKVLG TVRAVRPRIV TVVEQEANHN 480 SGTFLDRFTE SLHYYSTMFD SLEGAGSGSG SGSGSGQPTD ASPPAGTDQV MSEVYLGRQI 540 CNIVACEGAE RTERHETLVQ WRGRLGGSGF EPVHLGSNAY KQASTLLALF AGGDGYRVEE 600 KDGCLTLGWH TRPLIATSAW RVAAP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_A | 2e-58 | 219 | 620 | 1 | 377 | Protein SCARECROW |
5b3h_D | 2e-58 | 219 | 620 | 1 | 377 | Protein SCARECROW |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Zm.6402 | 0.0 | ear| endosperm| meristem| shoot| tassel |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G024973 |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcriptional regulator that acts as a repressor of the gibberellin (GA) signaling pathway. Probably acts by participating in large multiprotein complexes that repress transcription of GA-inducible genes. Upon GA application, it is degraded by the proteasome, allowing the GA signaling pathway. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G024973_P01 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | DQ903073 | 0.0 | DQ903073.1 Zea mays dwarf plant9 (d9) mRNA, d9-B73 allele, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001296780.1 | 0.0 | DELLA protein DWARF8-like | ||||
Swissprot | Q9ST48 | 0.0 | DWRF8_MAIZE; DELLA protein DWARF8 | ||||
TrEMBL | Q06F07 | 0.0 | Q06F07_MAIZE; Dwarf plant9 (Fragment) | ||||
STRING | GRMZM2G024973_P01 | 0.0 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP998 | 38 | 138 | Representative plant | OGRP1251 | 15 | 50 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G14920.1 | 0.0 | GRAS family protein |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G024973_P01 |
Entrez Gene | 100127531 |
Publications ? help Back to Top | |||
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