PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G023872_P01 | ||||||||
Common Name | LOC103635363, ZEAMMB73_233411, Zm.13257 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | GRAS | ||||||||
Protein Properties | Length: 508aa MW: 56088.1 Da PI: 6.3404 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 317.7 | 2.4e-97 | 99 | 475 | 1 | 373 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlsel..aspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPi 90 lv+lL++c a+++gd + aq L++ +++ p+ + + R+ ++f AL +rl+ +a pps+++ s+++ ++ f+++ P+ GRMZM2G023872_P01 99 LVHLLITCTSAIETGDYSIAQGNLSEARKIlgEIPTSTGIGRVGKHFIDALVQRLFP---AYPHAAPPSPSP----STSIDLHNNFYDAGPY 183 68***************************99899999*******************9...333444666655....667777889******* PP GRAS 91 lkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlv 182 lkf++ taNqaIl+a++g ++vHiiDf+++qGlQWpaL++ +++R++gpp+lRiTg+g++ g ++el+e+g rLak+A+++g++f f+ + GRMZM2G023872_P01 184 LKFAYSTANQAILKAIKGYNHVHIIDFSLMQGLQWPALMDVFSAREGGPPKLRITGIGPNPIGGRDELHEVGIRLAKYAHSVGIDFTFQGVC 275 ***********************************************************8888***************************** PP GRAS 183 akrledleleeLrvkp..gEalaVnlvlqlhrlldesvsles...erdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfd 269 +++l+ l ++L +kp gEa+a+n++lqlhrll ++ + + ++d +Lklv +++P +++vve+eadhn++++lerf++al +y+++fd GRMZM2G023872_P01 276 VDQLDRLCDWML-LKPikGEAVAINSILQLHRLLVDPDANPVvpaPIDILLKLVIKINPMIFTVVEHEADHNRPPLLERFTNALFHYATMFD 366 *******88888.56566***************97776655455699********************************************* PP GRAS 270 sleaklpres..eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk...sdgyrveeesg 356 slea +s + ++ +++l+ ei ++v+ eg++r+erhe +++Wrerl+ aG+++v ++ +++++ k l +v + g+++ +g GRMZM2G023872_P01 367 SLEAMHRCTSgrDITDSLTEVYLRGEIFDIVCGEGSARTERHELFGHWRERLTYAGLTQVWFDPDEVDTLKDQLIHVTslsGSGFNILVCDG 458 ***99888885555667999*********************************************9999886554443333788******** PP GRAS 357 slvlgWkdrpLvsvSaW 373 sl l W++rpL++++aW GRMZM2G023872_P01 459 SLALAWHNRPLYVATAW 475 ***************** PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 47.138 | 73 | 453 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 8.4E-95 | 99 | 475 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
Sequence ? help Back to Top |
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Protein Sequence Length: 508 aa Download sequence Send to blast |
MDAHTTHIVA RKNTSLSFTS NELMDHFPFA WLPMDPFTAM ALSGTLSPSF STTSTNDTMY 60 NLNPALYASL VPPIRKPATP TTLEVGRQCK EEEDASIRLV HLLITCTSAI ETGDYSIAQG 120 NLSEARKILG EIPTSTGIGR VGKHFIDALV QRLFPAYPHA APPSPSPSTS IDLHNNFYDA 180 GPYLKFAYST ANQAILKAIK GYNHVHIIDF SLMQGLQWPA LMDVFSAREG GPPKLRITGI 240 GPNPIGGRDE LHEVGIRLAK YAHSVGIDFT FQGVCVDQLD RLCDWMLLKP IKGEAVAINS 300 ILQLHRLLVD PDANPVVPAP IDILLKLVIK INPMIFTVVE HEADHNRPPL LERFTNALFH 360 YATMFDSLEA MHRCTSGRDI TDSLTEVYLR GEIFDIVCGE GSARTERHEL FGHWRERLTY 420 AGLTQVWFDP DEVDTLKDQL IHVTSLSGSG FNILVCDGSL ALAWHNRPLY VATAWCVTGG 480 NAASSMVGNI CKGTNDSRRK ENRNGPME |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5hyz_A | 2e-43 | 99 | 475 | 4 | 374 | GRAS family transcription factor containing protein, expressed |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Zm.13257 | 0.0 | embryo| endosperm| meristem |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G023872 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G023872_P01 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT068255 | 0.0 | BT068255.1 Zea mays full-length cDNA clone ZM_BFb0111E22 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001306661.1 | 0.0 | DELLA protein GAI-like | ||||
TrEMBL | C0PIY6 | 0.0 | C0PIY6_MAIZE; Uncharacterized protein | ||||
TrEMBL | K0DG08 | 0.0 | K0DG08_MAIZE; GRAS20 transcription factor (Fragment) | ||||
STRING | GRMZM2G023872_P01 | 0.0 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP998 | 38 | 138 | Representative plant | OGRP1251 | 15 | 50 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G01570.1 | 5e-84 | GRAS family protein |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G023872_P01 |
Entrez Gene | 103635363 |
Publications ? help Back to Top | |||
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