PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G023813_P01
Common NameARF31, ZEAMMB73_509018
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family ARF
Protein Properties Length: 462aa    MW: 50564.1 Da    PI: 5.4123
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G023813_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B366.54e-21116215298
                        EEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
                 B3   2 fkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 
                        +k+l++sd++  g +++p+ + + h       + +++  + l++ d++g++We+++ yr k+ r+vlt+GW++Fv+a+ L +gD++vF+  +
  GRMZM2G023813_P01 116 IKELSQSDANGGGSFCVPRYCGD-HvwpkvdfEADPPM-QNLVMHDTTGKQWEFRHVYRAKQPRHVLTTGWSKFVNAKLLVAGDIIVFM--R 203
                        58999*************99885.55*****9444444.37************************************************..6 PP

                        SSEE..EEEEE- CS
                 B3  87 rsefelvvkvfr 98 
                        r ++ l v+++r
  GRMZM2G023813_P01 204 RPNGDLIVGLRR 215
                        799999999997 PP
2Auxin_resp44.38e-16258327168
         Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmaf.etedsserrl.sGtvvgvsd 68 
                        aa+ a+++ +F+v+Y+Pr+++ eFvv++++ve  l++ + +G+ + m+f e ed +++ +  G v ++++
  GRMZM2G023813_P01 258 AARLAAEGRPFTVTYYPRKAAGEFVVPRNEVEGVLDTLWEPGSHVLMQFaEAEDTRRTMWaDGHVKAIHQ 327
                        678999******************************************97889999999999****9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.4E-26108218IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.23E-21112217IPR015300DNA-binding pseudobarrel domain
SMARTSM010191.9E-8115217IPR003340B3 DNA binding domain
CDDcd100171.06E-19116215No hitNo description
PfamPF023621.0E-17117215IPR003340B3 DNA binding domain
PROSITE profilePS5086312.182155217IPR003340B3 DNA binding domain
PfamPF065073.7E-11258327IPR010525Auxin response factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000037anatomyshoot apex
PO:0004006anatomymesophyll cell
PO:0006310anatomytassel floret
PO:0006339anatomyjuvenile vascular leaf
PO:0006340anatomyadult vascular leaf
PO:0006341anatomyprimary shoot system
PO:0006354anatomyear floret
PO:0006505anatomycentral spike of ear inflorescence
PO:0008018anatomytransition vascular leaf
PO:0009001anatomyfruit
PO:0009009anatomyplant embryo
PO:0009025anatomyvascular leaf
PO:0009054anatomyinflorescence bract
PO:0009066anatomyanther
PO:0009074anatomystyle
PO:0009084anatomypericarp
PO:0009089anatomyendosperm
PO:0020040anatomyleaf base
PO:0020104anatomyleaf sheath
PO:0020126anatomytassel inflorescence
PO:0020127anatomyprimary root
PO:0020136anatomyear inflorescence
PO:0020142anatomystem internode
PO:0020148anatomyshoot apical meristem
PO:0025142anatomyleaf tip
PO:0025287anatomyseedling coleoptile
PO:0025589anatomyleaf lamina tip
PO:0001007developmental stagepollen development stage
PO:0001009developmental stageD pollen mother cell meiosis stage
PO:0001052developmental stagevascular leaf expansion stage
PO:0001053developmental stagevascular leaf post-expansion stage
PO:0001083developmental stageinflorescence development stage
PO:0001094developmental stageplant embryo coleoptilar stage
PO:0001095developmental stageplant embryo true leaf formation stage
PO:0001180developmental stageplant proembryo stage
PO:0007001developmental stageearly whole plant fruit ripening stage
PO:0007003developmental stageIL.03 full inflorescence length reached stage
PO:0007006developmental stageIL.00 inflorescence just visible stage
PO:0007015developmental stageradicle emergence stage
PO:0007016developmental stagewhole plant flowering stage
PO:0007022developmental stageseed imbibition stage
PO:0007026developmental stageFL.00 first flower(s) open stage
PO:0007031developmental stagemid whole plant fruit ripening stage
PO:0007032developmental stagewhole plant fruit formation stage up to 10%
PO:0007045developmental stagecoleoptile emergence stage
PO:0007063developmental stageLP.07 seven leaves visible stage
PO:0007065developmental stageLP.05 five leaves visible stage
PO:0007072developmental stageLP.18 eighteen leaves visible stage
PO:0007094developmental stageLP.01 one leaf visible stage
PO:0007101developmental stageLP.09 nine leaves visible stage
PO:0007104developmental stageLP.15 fifteen leaves visible stage
PO:0007106developmental stageLP.03 three leaves visible stage
PO:0007112developmental stage1 main shoot growth stage
PO:0007116developmental stageLP.11 eleven leaves visible stage
PO:0007123developmental stageLP.06 six leaves visible stage
PO:0007633developmental stageendosperm development stage
PO:0021004developmental stageinflorescence initiation stage
Sequence ? help Back to Top
Protein Sequence    Length: 462 aa     Download sequence    Send to blast
MEPQPPLPLA NGHGNSIVDR DVWLACAAPL SRLPTVGDDV YYFPDGHAEQ CPAHLPAPLP  60
APHFFPCTVT DISLGADDKT DEVFAKISLR PGLAAASRPD PGSSNSPPRE PLSYSIKELS  120
QSDANGGGSF CVPRYCGDHV WPKVDFEADP PMQNLVMHDT TGKQWEFRHV YRAKQPRHVL  180
TTGWSKFVNA KLLVAGDIIV FMRRPNGDLI VGLRRMPRYA GTLHRPGTGG DAQDPDQPPP  240
PPPRNALARV PPKDVMEAAR LAAEGRPFTV TYYPRKAAGE FVVPRNEVEG VLDTLWEPGS  300
HVLMQFAEAE DTRRTMWADG HVKAIHQKIW RALEIDWDVA SSAISAQLGR FVNAWQVQRI  360
AYPSICGGLG DLCYPLPLME SESQVMAMIL EQMPPRTSAS PPNNPPRPGP GQKVNTIMLF  420
GATIHVVQSD TDDDGYEQLN RDPPPNAAGG GDDMDHDSAE NI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldy_A3e-482034421342Auxin response factor 1
4ldy_B3e-482034421342Auxin response factor 1
Search in ModeBase
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G023813
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, culms, leaves and young panicles. {ECO:0000269|PubMed:17408882}.
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G023813_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0678500.0BT067850.1 Zea mays full-length cDNA clone ZM_BFc0175C19 mRNA, complete cds.
GenBankEU9634590.0EU963459.1 Zea mays clone 262954 B3 DNA binding domain containing protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001149486.10.0uncharacterized LOC100283112
SwissprotQ7XSS91e-109ARFM_ORYSJ; Auxin response factor 13
TrEMBLA0A3L6G8I40.0A0A3L6G8I4_MAIZE; Auxin response factor
TrEMBLB6TEP40.0B6TEP4_MAIZE; Auxin response factor
STRINGGRMZM2G023813_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP113553137
Representative plantOGRP1320045
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77850.12e-69auxin response factor 17
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Alexandrov NN, et al.
    Insights into corn genes derived from large-scale cDNA sequencing.
    Plant Mol. Biol., 2009. 69(1-2): p. 179-94
    [PMID:18937034]