PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G023667_P01
Common NameSMH3, ZEAMMB73_537819
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family MYB_related
Protein Properties Length: 285aa    MW: 31346.7 Da    PI: 10.1315
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G023667_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding39.41.4e-12556147
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHHH CS
    Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqky 47
                       +++WT eE++ l ++v+++G g W+tI +  +       R+  ++k++w+++
  GRMZM2G023667_P01  5 KQKWTSEEEDALRRGVRKHGAGKWRTIQKDPQfspilSSRSNIDLKDKWRNL 56
                       79************************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.184160IPR017930Myb domain
SuperFamilySSF466899.33E-16258IPR009057Homeodomain-like
SMARTSM007172.2E-8459IPR001005SANT/Myb domain
PfamPF002492.1E-9556IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.3E-14556IPR009057Homeodomain-like
CDDcd116602.91E-21656No hitNo description
Gene3DG3DSA:1.10.10.101.9E-11111180IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467851.2E-13111190IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM005269.7E-13111176IPR005818Linker histone H1/H5, domain H15
PROSITE profilePS5150423.318113181IPR005818Linker histone H1/H5, domain H15
PfamPF005381.4E-8115174IPR005818Linker histone H1/H5, domain H15
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006334Biological Processnucleosome assembly
GO:0006499Biological ProcessN-terminal protein myristoylation
GO:0000786Cellular Componentnucleosome
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0004379Molecular Functionglycylpeptide N-tetradecanoyltransferase activity
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000037anatomyshoot apex
PO:0006340anatomyadult vascular leaf
PO:0008018anatomytransition vascular leaf
PO:0009025anatomyvascular leaf
PO:0020040anatomyleaf base
PO:0020104anatomyleaf sheath
PO:0020126anatomytassel inflorescence
PO:0020142anatomystem internode
PO:0020148anatomyshoot apical meristem
PO:0001007developmental stagepollen development stage
PO:0001052developmental stagevascular leaf expansion stage
PO:0001083developmental stageinflorescence development stage
PO:0007063developmental stageLP.07 seven leaves visible stage
PO:0007065developmental stageLP.05 five leaves visible stage
PO:0007101developmental stageLP.09 nine leaves visible stage
PO:0007104developmental stageLP.15 fifteen leaves visible stage
PO:0007106developmental stageLP.03 three leaves visible stage
PO:0007116developmental stageLP.11 eleven leaves visible stage
PO:0007123developmental stageLP.06 six leaves visible stage
PO:0021004developmental stageinflorescence initiation stage
Sequence ? help Back to Top
Protein Sequence    Length: 285 aa     Download sequence    Send to blast
MGAPKQKWTS EEEDALRRGV RKHGAGKWRT IQKDPQFSPI LSSRSNIDLK DKWRNLSFSA  60
SGLGSSKVRV PKITGSSSSP SSSSQALLLP AANNVTEAML PADADKKPRD GKTPPKYGAM  120
IMEALSELNQ PNGSDIDAIF DFIKQRHVVQ STFRRFLPSK LRRLADSNKI EKVDNFYRLP  180
DSFATRTPAQ IKVSDPKQKD PSKASKTIGL FAASSPALEA AMAAAVKVTD AEAKAHDAHD  240
QMMEAERMLK MAEDTESILT IAAEIYDRCS RGEITTLVPV AQREF
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.126060.0cell culture| ear| embryo| meristem| ovary| tassel
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G023667
Functional Description ? help Back to Top
Source Description
UniProtBinds preferentially double-stranded telomeric repeats, but may also bind to the single telomeric strand. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G023667_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY2806290.0AY280629.1 Zea mays single myb histone 3 (Smh3) mRNA, complete cds.
GenBankBT0538360.0BT053836.1 Zea mays full-length cDNA clone ZM_BFb0224E01 mRNA, complete cds.
GenBankEU9628380.0EU962838.1 Zea mays clone 245910 single myb histone 4 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001105225.10.0single myb histone 3
SwissprotQ6WLH40.0SMH3_MAIZE; Single myb histone 3
TrEMBLA0A1Q1C9360.0A0A1Q1C936_MAIZE; Homeodomain-like/winged-helix DNA-binding family protein
TrEMBLK4JE600.0K4JE60_MAIZE; MYB-related transcription factor (Fragment)
STRINGSb03g032530.11e-157(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G17520.19e-48MYB_related family protein
Publications ? help Back to Top
  1. Marian CO, et al.
    The maize Single myb histone 1 gene, Smh1, belongs to a novel gene family and encodes a protein that binds telomere DNA repeats in vitro.
    Plant Physiol., 2003. 133(3): p. 1336-50
    [PMID:14576282]
  2. Alexandrov NN, et al.
    Insights into corn genes derived from large-scale cDNA sequencing.
    Plant Mol. Biol., 2009. 69(1-2): p. 179-94
    [PMID:18937034]
  3. Soderlund C, et al.
    Sequencing, mapping, and analysis of 27,455 maize full-length cDNAs.
    PLoS Genet., 2009. 5(11): p. e1000740
    [PMID:19936069]
  4. Schnable PS, et al.
    The B73 maize genome: complexity, diversity, and dynamics.
    Science, 2009. 326(5956): p. 1112-5
    [PMID:19965430]