PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G021339_P03
Common Namepco078109, ZEAMMB73_703215
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family HD-ZIP
Protein Properties Length: 299aa    MW: 33147.1 Da    PI: 4.2768
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G021339_P03genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox64.71.3e-203487356
                       --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
           Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                       k++++t+eq++ Le+ Fe+++++  e+++eLA+klgL+ rqV vWFqNrRa++k
  GRMZM2G021339_P03 34 KKRRLTPEQVHLLERSFEEENKLEPERKTELARKLGLQPRQVAVWFQNRRARWK 87
                       5678*************************************************9 PP
2HD-ZIP_I/II132.81.3e-4233124192
        HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 
                        ekkrrl+ eqv+lLE+sFeee+kLeperK+elar+LglqprqvavWFqnrRAR+ktkqlE+d+++Lk+++dal++++++L +++++Lr+++ 
  GRMZM2G021339_P03  33 EKKRRLTPEQVHLLERSFEEENKLEPERKTELARKLGLQPRQVAVWFQNRRARWKTKQLERDFDRLKASFDALRADHDALLQDNHRLRSQVV 124
                        69**************************************************************************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466894.6E-202791IPR009057Homeodomain-like
PROSITE profilePS5007118.222989IPR001356Homeobox domain
SMARTSM003892.0E-203293IPR001356Homeobox domain
CDDcd000863.17E-193490No hitNo description
PfamPF000466.8E-183487IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.607.0E-223596IPR009057Homeodomain-like
PRINTSPR000311.8E-66069IPR000047Helix-turn-helix motif
PROSITE patternPS0002706487IPR017970Homeobox, conserved site
PRINTSPR000311.8E-66985IPR000047Helix-turn-helix motif
PfamPF021834.0E-1889130IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001558Biological Processregulation of cell growth
GO:0009637Biological Processresponse to blue light
GO:0009651Biological Processresponse to salt stress
GO:0009965Biological Processleaf morphogenesis
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 299 aa     Download sequence    Send to blast
MLGLEEGRGV KRPFYTSPDE LLEEEYYDEQ LPEKKRRLTP EQVHLLERSF EEENKLEPER  60
KTELARKLGL QPRQVAVWFQ NRRARWKTKQ LERDFDRLKA SFDALRADHD ALLQDNHRLR  120
SQVVSLTEKL REKEATEGDA NGAAAALPAV GVVRASVADD VEEPEPEPEP EAEAAAFEER  180
QVKSEDRLST GSGGSAVVDA ADALLYNGRI GGAAVDSSVE SYFPGAEVQD QYHGCGTMGP  240
VTHGAGGIQS DDDDGAGSDE GCSYYADEEA AAAFLSEHTH HADGDDEDAG QVSWWWMWN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18189RRARWKTKQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.1186990.0ear| endosperm
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G021339
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in seedlings, stems, leaf sheaths and blades and panicles. {ECO:0000269|PubMed:17999151}.
UniprotTISSUE SPECIFICITY: Expressed in seedlings, stems, leaf sheaths and blades and panicles. {ECO:0000269|PubMed:17999151}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
UniProtProbable transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00323DAPTransfer from AT3G01470Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G021339_P03
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0670170.0BT067017.1 Zea mays full-length cDNA clone ZM_BFb0151L17 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008677601.10.0putative homeobox DNA-binding and leucine zipper domain family protein isoform X1
SwissprotA2X9801e-119HOX16_ORYSI; Homeobox-leucine zipper protein HOX16
SwissprotQ6YWR41e-119HOX16_ORYSJ; Homeobox-leucine zipper protein HOX16
TrEMBLA0A3L6F7110.0A0A3L6F711_MAIZE; Homeobox-leucine zipper protein HOX16
TrEMBLK7U8D50.0K7U8D5_MAIZE; Putative homeobox DNA-binding and leucine zipper domain family protein isoform 1
STRINGGRMZM2G021339_P010.0(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01470.11e-60homeobox 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]