PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G019060_P01
Common NameGRAS85
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family GRAS
Protein Properties Length: 586aa    MW: 63755.6 Da    PI: 5.498
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G019060_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS305.61.2e-931785852374
               GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalkl.fsevsPilk 92 
                         +lLlecA+av+++d +++q+l++ l+elasp+gd  q+la+yf+++L arl+ s++++ ++l++ +++++ s +++  + l f+e+sP+  
  GRMZM2G019060_P01 178 SQLLLECARAVAARDSQRVQQLMWMLNELASPYGDVEQKLASYFLQGLFARLTASGPQTLRTLAAASDRNT-SFDSTRRTALrFQELSPWSS 268
                        589************************************************************99888744.44444444446********* PP

               GRAS  93 fshltaNqaIleavege.......ervHiiDfdisqGlQWpaLlqaLasRp.egppslRiTgvgspesg........skeeleetgerLakf 168
                        f+h++aN aIle++ ++       +r Hi+D++ + ++QWp+Ll+aLa+R+ +++p+l iT+v+s++++        +++ ++e+g+r++kf
  GRMZM2G019060_P01 269 FGHVAANGAILESFLEAaaassepQRFHILDLSNTFCTQWPTLLEALATRStDDTPHLSITTVVSAAPSaptvavqrRQRVMREIGQRIEKF 360
                        ************987766667778999************************899***********99889999**999999*********** PP

               GRAS 169 Aeelgvpfefnvlvak.rledleleeLrvkp...gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnse..... 251
                        A+ +gvpf+f+++++  +l++l+l++L+++      ala+n+  +l  ++  ++ ++  rd++   +++l P+vv+vve+ead+ +      
  GRMZM2G019060_P01 361 ARLMGVPFSFRAVHHAgDLAELDLDALDLRDggaTTALAINCLNSLRGVV--PGGVRR-RDAFGASLRRLDPRVVTVVEEEADLVAFdpdas 449
                        ************97767**************888889************9..666666.99********************99844346788 PP

               GRAS 252 ........sFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaak 335
                                 Fl+ f e l+++sa +dsle+++p++s+er  +Er   gr+iv++v+c  +++ er+et+ +W +r+++aGF+pv++se++a+
  GRMZM2G019060_P01 450 eesgdteaAFLKVFGEGLRFFSAYMDSLEESFPKTSNERLALERG-AGRAIVDLVSCPPSKSMERRETAVSWARRMRSAGFSPVAFSEDVAD 540
                        88999999*************************************.********************************************** PP

               GRAS 336 qaklllrkvksdgyrveee.......sgslvlgWkdrpLvsvSaWr 374
                        ++++llr++  +g+++ +         + ++l Wk++pLv++SaWr
  GRMZM2G019060_P01 541 DVRSLLRRYR-EGWSMRDTglddsaaGAGIFLAWKEQPLVWASAWR 585
                        *********9.88888844444455356667**************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098550.742151559IPR005202Transcription factor GRAS
PfamPF035144.1E-91178585IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008356Biological Processasymmetric cell division
GO:0009956Biological Processradial pattern formation
GO:0045930Biological Processnegative regulation of mitotic cell cycle
GO:0048366Biological Processleaf development
GO:0055072Biological Processiron ion homeostasis
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 586 aa     Download sequence    Send to blast
MDTLFRSVSL QASEQQQQQQ SASYNSRSTT SSGSRSSSHQ TDASYNYYYH SNSGVGGVGQ  60
YYYGQQNQQY YQEPYQQEEC GNAHRLYMDE DFSSSSSSRQ HFHSHGAAVQ PATSSAVTAT  120
APTPPLSTSS TAAGAAHALF EAADLSFPPD LNLDFSSPAS SSGGCVASSA AVGGRWASQL  180
LLECARAVAA RDSQRVQQLM WMLNELASPY GDVEQKLASY FLQGLFARLT ASGPQTLRTL  240
AAASDRNTSF DSTRRTALRF QELSPWSSFG HVAANGAILE SFLEAAAASS EPQRFHILDL  300
SNTFCTQWPT LLEALATRST DDTPHLSITT VVSAAPSAPT VAVQRRQRVM REIGQRIEKF  360
ARLMGVPFSF RAVHHAGDLA ELDLDALDLR DGGATTALAI NCLNSLRGVV PGGVRRRDAF  420
GASLRRLDPR VVTVVEEEAD LVAFDPDASE ESGDTEAAFL KVFGEGLRFF SAYMDSLEES  480
FPKTSNERLA LERGAGRAIV DLVSCPPSKS MERRETAVSW ARRMRSAGFS PVAFSEDVAD  540
DVRSLLRRYR EGWSMRDTGL DDSAAGAGIF LAWKEQPLVW ASAWRP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_B1e-15917358683474Protein SHORT-ROOT
5b3h_B1e-15917358629420Protein SHORT-ROOT
5b3h_E1e-15917358629420Protein SHORT-ROOT
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.828230.0meristem
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G019060
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: In P3 leaf primordium, expressed ubiquitously in the L1 layer and in the inner cells at lower levels. Not limited to the developing stomata until the last cell divisions. {ECO:0000269|PubMed:12974810}.
UniprotTISSUE SPECIFICITY: Expressed in leaves and roots. Detected in the stele, the endodermis and part of the cortex. {ECO:0000269|PubMed:12974810, ECO:0000269|PubMed:17446396}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor required for the asymmetric cell division involved in radial pattern formation in roots. Essential for both cell division and cell specification. {ECO:0000269|PubMed:17446396}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G019060_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7282720.0KJ728272.1 Zea mays clone pUT6549 GRAS transcription factor (GRAS85) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008670524.10.0protein SHORT-ROOT 1
SwissprotQ8H2X80.0SHR1_ORYSJ; Protein SHORT-ROOT 1
TrEMBLA0A060D7Z40.0A0A060D7Z4_MAIZE; GRAS transcription factor (Fragment)
TrEMBLA0A3L6G1W80.0A0A3L6G1W8_MAIZE; Protein SHORT-ROOT 1
STRINGGRMZM2G019060_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP35263781
Representative plantOGRP27551332
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37650.11e-139GRAS family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]