PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G018876_P01 | ||||||||
Common Name | Orphan198, Zm.78343 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | DBB | ||||||||
Protein Properties | Length: 259aa MW: 27665.3 Da PI: 4.6429 | ||||||||
Description | DBB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 21.2 | 5.9e-07 | 4 | 46 | 5 | 41 |
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvvp 41 C+ +e + C ++ lC+ C +e+H H++ p GRMZM2G018876_P01 4 QCDACEAAAAAVVCCADEAALCARCDVEIHAAnklaskHQRLP 46 6******99*********************6678888898877 PP | |||||||
2 | zf-B_box | 28.4 | 3.4e-09 | 57 | 88 | 3 | 34 |
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeH 34 ++C+ ++e ++ +fC +++ llC+dC + +H GRMZM2G018876_P01 57 LPRCDVCQERPAFIFCVEDRALLCRDCDEPIH 88 689**************************999 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50119 | 9.997 | 1 | 47 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 1.0E-8 | 4 | 47 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS50119 | 9.03 | 55 | 102 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 2.4E-15 | 55 | 102 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 4.3E-7 | 58 | 98 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 6.27E-10 | 58 | 99 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 259 aa Download sequence Send to blast |
MRIQCDACEA AAAAVVCCAD EAALCARCDV EIHAANKLAS KHQRLPLGDA AALPASLPRC 60 DVCQERPAFI FCVEDRALLC RDCDEPIHVP GTLSGNHQRY LATGIRVGFS SVCGASAEGL 120 PPAPPKGSSK PTAVVSAPAA GTTTKTRTVK DALPQEVPSS PFLPPSGWAV EDLLELSDYE 180 SSDKKDSSLG LKELEWFEDI DLFHAHSPAK TAMAEFFASP QPVSNAGFYK ANGARLFKKS 240 RMEVPDDDDE DYFIVPDLG |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Zm.78343 | 0.0 | ear| meristem| ovary| pollen| root |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G018876 |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: High expression in leaves and lower in roots and flowers. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Acts as negative regulator of seedling photomorphogenesis and light-regulated inhibition of hypocotyl elongation (PubMed:17605755, PubMed:18540109, PubMed:21685177). BBX24/STO and BBX25/STH function as transcriptional corepressors of HY5 activity, leading to the down-regulation of BBX22 expression. BBX24/STO acts additively with BBX25/STH during de-etiolation and the hypocotyl shade avoidance response (PubMed:23624715). Functions as negative regulator of photomorphogenic UV-B responses by interacting with both COP1 and HY5 (PubMed:22410790). May act as a transcription factor in the salt-stress response (PubMed:12909688). {ECO:0000269|PubMed:12909688, ECO:0000269|PubMed:17605755, ECO:0000269|PubMed:18540109, ECO:0000269|PubMed:21685177, ECO:0000269|PubMed:22410790, ECO:0000269|PubMed:23624715}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G018876_P01 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Circadian regulation with a peak before dawn. {ECO:0000269|PubMed:17605755}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KJ728300 | 0.0 | KJ728300.1 Zea mays clone pUT6580 orphans transcription factor (Orphan198) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001149477.1 | 0.0 | uncharacterized protein LOC100283103 | ||||
Swissprot | Q96288 | 5e-71 | BBX24_ARATH; B-box zinc finger protein 24 | ||||
TrEMBL | A0A060CZ22 | 0.0 | A0A060CZ22_MAIZE; Orphans transcription factor (Fragment) | ||||
STRING | GRMZM2G018876_P01 | 0.0 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3202 | 33 | 68 | Representative plant | OGRP5397 | 10 | 20 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G06040.1 | 6e-47 | DBB family protein |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G018876_P01 |
Publications ? help Back to Top | |||
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