PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G018436_P01
Common NameNAC126, Zm.4179
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family NAC
Protein Properties Length: 322aa    MW: 35364.5 Da    PI: 7.0337
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G018436_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM169.51.1e-52201551129
                NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 
                        lppGfrFhPtdee+++ yL +k  + ++   ++i evd++k+ePwdLp k k+ +++kewyfF+++d ky+tg+r+nratk+gyWkatgkd+
  GRMZM2G018436_P01  20 LPPGFRFHPTDEEVITSYLLHKFLNPSFAP-HAIGEVDLNKCEPWDLPsKaKMGENSKEWYFFCHKDMKYPTGTRANRATKEGYWKATGKDR 110
                        79*************************888.78**************95236666777********************************** PP

                NAM  91 evlsk......kgelvglkktLvfykgrapkgektdWvmheyrle 129
                        e+++       ++elvg++ktLvfy grap+g+kt+Wvmhe+rle
  GRMZM2G018436_P01 111 EIFKPaagrdrDRELVGMRKTLVFYMGRAPRGTKTNWVMHEFRLE 155
                        ***999888877788***************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.18E-5817181IPR003441NAC domain
PROSITE profilePS5100556.220181IPR003441NAC domain
PfamPF023656.9E-2721154IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 322 aa     Download sequence    Send to blast
MVELEPSVKS EHGGGVGLVL PPGFRFHPTD EEVITSYLLH KFLNPSFAPH AIGEVDLNKC  60
EPWDLPSKAK MGENSKEWYF FCHKDMKYPT GTRANRATKE GYWKATGKDR EIFKPAAGRD  120
RDRELVGMRK TLVFYMGRAP RGTKTNWVMH EFRLEGKSRH TCNDLRFNPK DEWVVCKVHH  180
KGAEEASAAK KSAGGGGEEH YYSTATPNVS SVEGGDEFLV DSLLDYSSYF NCFATGGLPL  240
PSTTANSAAA PATNDDDSSW SMLRHAPADQ QAMVGSYSLH HQAMKAKTVG GVTSPSFSAG  300
LPSSPVADYV GNDASGYHTN NY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A8e-501819015171NO APICAL MERISTEM PROTEIN
1ut4_B8e-501819015171NO APICAL MERISTEM PROTEIN
1ut7_A8e-501819015171NO APICAL MERISTEM PROTEIN
1ut7_B8e-501819015171NO APICAL MERISTEM PROTEIN
3swm_A8e-501819018174NAC domain-containing protein 19
3swm_B8e-501819018174NAC domain-containing protein 19
3swm_C8e-501819018174NAC domain-containing protein 19
3swm_D8e-501819018174NAC domain-containing protein 19
3swp_A8e-501819018174NAC domain-containing protein 19
3swp_B8e-501819018174NAC domain-containing protein 19
3swp_C8e-501819018174NAC domain-containing protein 19
3swp_D8e-501819018174NAC domain-containing protein 19
4dul_A8e-501819015171NAC domain-containing protein 19
4dul_B8e-501819015171NAC domain-containing protein 19
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.41790.0endosperm| root
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G018436
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Predominantly expressed in developing vascular tissue of the leaves and roots, and in developing flowers. {ECO:0000269|PubMed:15654622}.
UniprotTISSUE SPECIFICITY: Expressed in phloem. {ECO:0000269|PubMed:15654622}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in stress response (By similarity). Binds to DNA-specific sequences of CLPD1 and OAT promoters in vitro (PubMed:18813954). {ECO:0000250|UniProtKB:Q7F2L3, ECO:0000269|PubMed:18813954}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G018436_P01
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt and cold stresses. {ECO:0000269|PubMed:18813954}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9560080.0EU956008.1 Zea mays clone 1555391 NAC domain-containing protein 77 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001147618.10.0uncharacterized LOC100281227
SwissprotQ5CD177e-96NAC77_ORYSJ; NAC domain-containing protein 77
TrEMBLA0A3L6FWK10.0A0A3L6FWK1_MAIZE; NAC domain-containing protein 77
TrEMBLB6STE30.0B6STE3_MAIZE; NAC domain-containing protein 77
STRINGGRMZM2G018436_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP51203063
Representative plantOGRP1715800
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18270.28e-69Arabidopsis NAC domain containing protein 87
Publications ? help Back to Top
  1. Alexandrov NN, et al.
    Insights into corn genes derived from large-scale cDNA sequencing.
    Plant Mol. Biol., 2009. 69(1-2): p. 179-94
    [PMID:18937034]