PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G018414_P02
Common NameZm.6771
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family GRF
Protein Properties Length: 322aa    MW: 35836 Da    PI: 9.4646
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G018414_P02genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC77.21.6e-245296145
                WRC  1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45
                       d+epgrCrRtDGKkWRCs+++++++k+CErH++r+r+rsrk++e+
  GRMZM2G018414_P02 52 DPEPGRCRRTDGKKWRCSKEAMPDHKYCERHINRNRHRSRKPVEN 96
                       79****************************************997 PP
2QLQ385.1e-14129937
                QLQ  9 qlLksQilAyKyLaanqPvPpeLlqaiqk 37
                       ++L++Q+l+yKyL+a++P+P+ Ll+ i+k
  GRMZM2G018414_P02  1 MELEHQALIYKYLNAKAPIPSSLLVSISK 29
                       79***********************9975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF088803.7E-8127IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166616.195129IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166725.4715296IPR014977WRC domain
PfamPF088791.3E-205395IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 322 aa     Download sequence    Send to blast
MELEHQALIY KYLNAKAPIP SSLLVSISKS FRSSNRVSWR PLYQGYANAD SDPEPGRCRR  60
TDGKKWRCSK EAMPDHKYCE RHINRNRHRS RKPVENQPRK ATKEVTTAAA GSLPCAGPQG  120
SLKKAKVNDS KPGTGSYWTD SLNRTMLSRE KANKPTDDES LLLSSTKNSQ PTLSLLTQLK  180
QQNKPDKLGP TPENEPNSDT MLKAWGGSHH KSISSTQRHD AESLQSVLQN FSLAQNDRLE  240
SEKNRYSDSV LVSSAFYSAD GPQTTCLTPN MTQVQQDCIS SSWEMPQGGP LGEILTNSKI  300
SEDLSKCGSR SYGWLLNLDH AP
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.67710.0ear| meristem| silk| tassel
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G018414
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that plays a regulatory role in gibberellin-induced stem elongation. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G018414_P02
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0850710.0BT085071.1 Zea mays full-length cDNA clone ZM_BFb0279J23 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001106044.10.0putative growth-regulating factor 13
SwissprotQ9FRG81e-138GRF9_ORYSJ; Growth-regulating factor 9
TrEMBLC4J2M40.0C4J2M4_MAIZE; Growth-regulating factor 2
STRINGGRMZM2G018414_P010.0(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37740.13e-46growth-regulating factor 2
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]