PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G017923_P01
Common NameAY110182
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family C3H
Protein Properties Length: 499aa    MW: 55284.6 Da    PI: 5.069
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G017923_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH17.48e-06150172326
                        S---SGGGGTS--TTTTT-SS-SS CS
            zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                        +++C+ff++   C++G++C+ +Hg
  GRMZM2G017923_P01 150 MSICKFFLQ-QRCRFGSNCRMSHG 172
                        579******.*********98776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003568.9E-5147173IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.868147174IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.15E-5148172IPR000571Zinc finger, CCCH-type
SMARTSM004431.9E-14302348IPR000467G-patch domain
PROSITE profilePS5017413.331304363IPR000467G-patch domain
PfamPF015858.2E-13304346IPR000467G-patch domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0006339anatomyjuvenile vascular leaf
PO:0006340anatomyadult vascular leaf
PO:0006341anatomyprimary shoot system
PO:0006354anatomyear floret
PO:0006505anatomycentral spike of ear inflorescence
PO:0008018anatomytransition vascular leaf
PO:0009001anatomyfruit
PO:0009025anatomyvascular leaf
PO:0009074anatomystyle
PO:0020040anatomyleaf base
PO:0020142anatomystem internode
PO:0025142anatomyleaf tip
PO:0001052developmental stagevascular leaf expansion stage
PO:0001053developmental stagevascular leaf post-expansion stage
PO:0001083developmental stageinflorescence development stage
PO:0001094developmental stageplant embryo coleoptilar stage
PO:0001095developmental stageplant embryo true leaf formation stage
PO:0001180developmental stageplant proembryo stage
PO:0007001developmental stageearly whole plant fruit ripening stage
PO:0007003developmental stageIL.03 full inflorescence length reached stage
PO:0007016developmental stagewhole plant flowering stage
PO:0007031developmental stagemid whole plant fruit ripening stage
PO:0007032developmental stagewhole plant fruit formation stage up to 10%
PO:0007063developmental stageLP.07 seven leaves visible stage
PO:0007065developmental stageLP.05 five leaves visible stage
PO:0007072developmental stageLP.18 eighteen leaves visible stage
PO:0007094developmental stageLP.01 one leaf visible stage
PO:0007101developmental stageLP.09 nine leaves visible stage
PO:0007106developmental stageLP.03 three leaves visible stage
PO:0007116developmental stageLP.11 eleven leaves visible stage
PO:0007633developmental stageendosperm development stage
Sequence ? help Back to Top
Protein Sequence    Length: 499 aa     Download sequence    Send to blast
MAGEGEDEAA AIERQLEQQL QEQRSSLAAV DEALAADPSN ADLLEVHEEL LAAIKDAEEG  60
LLHLKRSRLL KQVDEIFPDK ESISQSPEVA IESLDPDDVE PEPLESHDFS VGSKCRFRHN  120
NGRWYNGCII GFEGSGDARI SFLTPTSENM SICKFFLQQR CRFGSNCRMS HGIVMPSKAL  180
KRFTPTRWEQ SLVGSSILAT SGYNSGLWRR AELESWDDNL KIGQVVFQDD GSSASLPSDS  240
LSVSEYADMS DEDEGSLSDE ESEFSDDADQ EDGSVHQGLG LLEFTNFSGI QTDTMIFAKW  300
EHHTRGVASK MMAKMGYREG MGLGVSGQGM LDPIPVKVLP PKQSLDHALA SSEADGGSGK  360
KRSRGGKRKR EKKFAEQARA AKAEEAERSV FNFINSHLVS QEGSTTKVRK GSSVETNGLA  420
KKEDRRSLVA YGEEVKELRI RVEKLEEMKN RNCKDKAFFE AASRKLEETR KALADAEATH  480
ASATSAVTRK EKEKKWLKF
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1358364GKKRSRG
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.263550.0ear| meristem| shoot| tassel
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G017923
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G017923_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0342680.0BT034268.1 Zea mays full-length cDNA clone ZM_BFc0007I14 mRNA, complete cds.
GenBankBT0640310.0BT064031.1 Zea mays full-length cDNA clone ZM_BFc0132O21 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001130891.10.0uncharacterized protein LOC100191995
SwissprotQ6K6870.0C3H18_ORYSJ; Zinc finger CCCH domain-containing protein 18
TrEMBLB4FAY00.0B4FAY0_MAIZE; Zinc finger CCCH domain-containing protein 22
STRINGGRMZM2G017923_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP557055
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24830.11e-137C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]