PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AT2G24830.1
Common NameF27C12.25
Organism
Arabidopsis thaliana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family C3H
Protein Properties Length: 497aa    MW: 55934.9 Da    PI: 5.3025
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AT2G24830.1genomeTAIRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH19.51.7e-06141161526
                  --SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                  +C+ff++   C++G++C+ +Hg
  AT2G24830.1 141 ICKFFMQ-QRCRFGSSCRSSHG 161
                  6******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.605136163IPR000571Zinc finger, CCCH-type
SMARTSM003561.4E-4136162IPR000571Zinc finger, CCCH-type
PfamPF006422.3E-4141161IPR000571Zinc finger, CCCH-type
SMARTSM004435.8E-15298344IPR000467G-patch domain
PfamPF015853.4E-14300343IPR000467G-patch domain
PROSITE profilePS5017413.587300346IPR000467G-patch domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008150Biological Processbiological_process
GO:0005622Cellular Componentintracellular
GO:0003677Molecular FunctionDNA binding
GO:0046872Molecular Functionmetal ion binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000013anatomycauline leaf
PO:0000037anatomyshoot apex
PO:0000084anatomyplant sperm cell
PO:0000230anatomyinflorescence meristem
PO:0000293anatomyguard cell
PO:0008019anatomyleaf lamina base
PO:0009005anatomyroot
PO:0009006anatomyshoot system
PO:0009009anatomyplant embryo
PO:0009010anatomyseed
PO:0009025anatomyvascular leaf
PO:0009029anatomystamen
PO:0009030anatomycarpel
PO:0009031anatomysepal
PO:0009032anatomypetal
PO:0009046anatomyflower
PO:0009047anatomystem
PO:0009052anatomyflower pedicel
PO:0020030anatomycotyledon
PO:0020038anatomypetiole
PO:0020100anatomyhypocotyl
PO:0020137anatomyleaf apex
PO:0025022anatomycollective leaf structure
PO:0025195anatomypollen tube cell
PO:0025281anatomypollen
PO:0001016developmental stageL mature pollen stage
PO:0001017developmental stageM germinated pollen stage
PO:0001054developmental stagevascular leaf senescent stage
PO:0001078developmental stageplant embryo cotyledonary stage
PO:0001081developmental stagemature plant embryo stage
PO:0001185developmental stageplant embryo globular stage
PO:0004507developmental stageplant embryo bilateral stage
PO:0007064developmental stageLP.12 twelve leaves visible stage
PO:0007095developmental stageLP.08 eight leaves visible stage
PO:0007098developmental stageLP.02 two leaves visible stage
PO:0007103developmental stageLP.10 ten leaves visible stage
PO:0007115developmental stageLP.04 four leaves visible stage
PO:0007123developmental stageLP.06 six leaves visible stage
PO:0007611developmental stagepetal differentiation and expansion stage
PO:0007616developmental stageflowering stage
Sequence ? help Back to Top
Protein Sequence    Length: 497 aa     Download sequence    Send to blast
MASEENNDLE NLLDIQLIEQ KESLSSIDEA LLSDPSNPEL LSVHEELLSA IKEVEEGLLH  60
LKRARLLEEA DIVLNGLNHD AGVKPEHLEP EKTEEKKDLD GSKCRFRHTD GRWYNGRIIG  120
FEGSDSAKIS FLTPTSESMM ICKFFMQQRC RFGSSCRSSH GLDVPISSLK NYEQTEWKQL  180
MVGSKIWAVS GSKYDIWRKA ELESWDDELQ VGGVVFRDDK SSAKLGSDSL ALSEYAQMTD  240
DDGEEEEEED EQQSASDSED SVSSDYDEGS PQGIGFLEST NLPRGVQTDT ALFAKWENHT  300
RGIASKMMAS MGYREGMGLG VSGQGILNPI LVKVLPAKRS LDYALEHIRN GECKSEKQKK  360
KRSRGGKRKR GKKFAEAAKA AKQEEESKPD LFSLINEQIF PTRHEKVHSE SVKNRQNKGP  420
VDRKALVEYQ DEVRDLKLEM LKLEQMVNRN KKDLVVSEAA TRRLKEVRKA LASTLACQAA  480
ASNAIVSKEN EKKWLKF
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1357372QKKKRSRGGKRKRGKK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
At.696300.0flower| inflorescence
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO1453602940.0
Genevisible263526_at0.0
Expression AtlasAT2G24830-
AtGenExpressAT2G24830-
ATTED-IIAT2G24830-
Cis-element ? help Back to Top
SourceLink
PlantRegMapAT2G24830.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
T-DNA ExpressAT2G24830
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2291890.0AK229189.1 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL16-48-E22.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_180056.10.0zinc finger (CCCH-type) family protein / D111/G-patch domain-containing protein
SwissprotQ9SK490.0C3H22_ARATH; Zinc finger CCCH domain-containing protein 22
TrEMBLA0A178W1790.0A0A178W179_ARATH; Uncharacterized protein
STRINGAT2G24830.10.0(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM94371016
Representative plantOGRP557055
Publications ? help Back to Top
  1. Wang D, et al.
    Genome-wide analysis of CCCH zinc finger family in Arabidopsis and rice.
    BMC Genomics, 2008. 9: p. 44
    [PMID:18221561]
  2. Wang Y, et al.
    Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in Arabidopsis.
    Plant Physiol., 2008. 148(3): p. 1201-11
    [PMID:18775970]