PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G013688_P01
Common NamebHLH109
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family bHLH
Protein Properties Length: 290aa    MW: 30921.8 Da    PI: 5.3978
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G013688_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.58.6e-12120165454
                        HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                        +h e Er+RR+++N +f  Lr  +P+       +++Ka+ L  A  YI +L
  GRMZM2G013688_P01 120 SHVESERQRREKLNRRFCDLRAAVPTV-----SRMDKASLLADAASYIAEL 165
                        899***********************6.....49**************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474593.01E-15115178IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.913116165IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.14E-10119166No hitNo description
PfamPF000102.7E-9120165IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.9E-15120178IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.6E-10122171IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 290 aa     Download sequence    Send to blast
MDDLLSPCSS FSPPSPPSFF SHAVHPVIEF ASCEVPEQWL LDDLVVAKNE GYDDVDDLWP  60
VRSSLSPDSE VSEQPLPPQP PPPSQQELTS VRAAPAQQQQ RLGKRRGRKP GPRPDGPAVS  120
HVESERQRRE KLNRRFCDLR AAVPTVSRMD KASLLADAAS YIAELRGRVA RLEADSRRAA  180
ASRWDPAVAA AASASTATIG LAGAGGGADE AVEVRMLGPD AAAVRATSAG PHAPARLMGA  240
LRSLELHVQH ACVTRVNGVT VLDVVVDVAT PLQDDDGGLR ATLLQMMQDS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A7e-17119175763Transcription factor MYC2
5gnj_B7e-17119175763Transcription factor MYC2
5gnj_E7e-17119175763Transcription factor MYC2
5gnj_F7e-17119175763Transcription factor MYC2
5gnj_G7e-17119175763Transcription factor MYC2
5gnj_I7e-17119175763Transcription factor MYC2
5gnj_M7e-17119175763Transcription factor MYC2
5gnj_N7e-17119175763Transcription factor MYC2
Search in ModeBase
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G013688
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G013688_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7270120.0KJ727012.1 Zea mays clone pUT3993 bHLH transcription factor (bHLH109) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008652936.10.0transcription factor MYC2
TrEMBLA0A060D4L20.0A0A060D4L2_MAIZE; BHLH transcription factor (Fragment)
STRINGGRMZM2G013688_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP89333130
Representative plantOGRP1312745
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32640.12e-20bHLH family protein