PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G013581_P01
Common NameMYB62, umc2501
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family MYB
Protein Properties Length: 306aa    MW: 34046.7 Da    PI: 7.3398
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G013581_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.84.6e-173885148
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
    Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                       +g+WT eEde+lv+ v+++G ++W+  a+  g++Rt+k+c++rw +yl
  GRMZM2G013581_P01 38 KGPWTDEEDEQLVRFVRLFGERRWDFLAKVSGLRRTGKSCRLRWVNYL 85
                       79********************************************97 PP
2Myb_DNA-binding521.6e-1691134146
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
    Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                        rgr T++E+ ++v++++q+G++ W++Iar ++ gRt++++k++w++
  GRMZM2G013581_P01  91 RGRITADEERRIVELHAQWGSR-WSRIARSLP-GRTDNEIKNFWRT 134
                        899*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129423.5163389IPR017930Myb domain
SuperFamilySSF466896.64E-2836132IPR009057Homeodomain-like
SMARTSM007171.1E-153787IPR001005SANT/Myb domain
PfamPF002493.4E-153885IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.8E-203992IPR009057Homeodomain-like
CDDcd001672.95E-114085No hitNo description
PROSITE profilePS5129418.14390140IPR017930Myb domain
SMARTSM007174.7E-1390138IPR001005SANT/Myb domain
PfamPF002491.0E-1391134IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.3E-2293139IPR009057Homeodomain-like
CDDcd001672.63E-995134No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    Send to blast
MSSLLCISRR NNKKDSDGDG EYGGEQIIIS TGGAAMRKGP WTDEEDEQLV RFVRLFGERR  60
WDFLAKVSGL RRTGKSCRLR WVNYLHPGLR RGRITADEER RIVELHAQWG SRWSRIARSL  120
PGRTDNEIKN FWRTRTRKKA LEERRAAAAA TSTAAESASS VMTVSSSSEC RRPPVSSSSS  180
SSSLRRDEAR RSGDETEEAS TPTAAPATKH DEEPQPQPQE CYDFPMDQLW NEIAAADAAA  240
MSYLVVDACW GGAAVGGHCY YYGAAAASAA SPPPPASPPW EYCGSDFSLW RIDDQEYYKK  300
MLDSSS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A8e-26381404105MYB PROTO-ONCOGENE PROTEIN
1mse_C8e-26381404105C-Myb DNA-Binding Domain
1msf_C8e-26381404105C-Myb DNA-Binding Domain
Search in ModeBase
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G013581
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G013581_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7283600.0KJ728360.1 Zea mays clone pUT6642 MYB transcription factor (MYB62) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001340477.11e-157uncharacterized protein LOC100272853 isoform 2
TrEMBLK7UIU30.0K7UIU3_MAIZE; MYB transcription factor (Fragment)
STRINGGRMZM2G013581_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP63637169
Representative plantOGRP1995322
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G59780.35e-52myb domain protein 59