PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G013016_P01
Common NameLOC103652347
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family GRAS
Protein Properties Length: 538aa    MW: 57765.5 Da    PI: 6.5057
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G013016_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS340.33.4e-1041615371374
               GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvsel....ykal.ppsetseknsseelaalklfsev 87 
                        lv+lL++cAeav+ +d ++a alL +l+  a  +g+++qR+a++f+++La rla   +      + a+  p + + ++   ++ al l +++
  GRMZM2G013016_P01 161 LVQLLVACAEAVACRDRAQAAALLRELQAGAPVHGTAFQRVASCFVQGLADRLALAHPPAlgpaSMAFcIPPSCAGRDGGARAEALALAYDL 252
                        689**************************************************98555431111222212333334558889999999**** PP

               GRAS  88 sPilkfshltaNqaIleavegeervHiiDfdisqGl....QWpaLlqaLasRp...egppslRiTgvgspesgskeeleetgerLakfAeel 172
                        +P+l+f+h++aN  Ilea+ege+ vH++D++++ Gl    QW aLl+ La+R+   + p+++R+T+vg+     +++++++g+ L  +Ae l
  GRMZM2G013016_P01 253 CPYLRFAHFVANASILEAFEGETNVHVLDLGMTLGLdrahQWRALLDGLAARAgaaARPARVRVTAVGA----PADAMRAVGRELLAYAEGL 340
                        *******************************999866666*************7655588*********....89***************** PP

               GRAS 173 gvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyy 264
                        g+ +ef++ v ++le+l++++L +  +Ea+a+n+vl+lh +++es    +   +vL+++++lsPk +v+veq+a hn++ Fl rf+eal+yy
  GRMZM2G013016_P01 341 GMCLEFRA-VDRSLESLHIDDLGIAADEAVAINSVLELHCVVKESRGALN---SVLQTIRKLSPKAFVLVEQDAGHNGPFFLGRFMEALHYY 428
                        ********.799******************************88877777...8************************************** PP

               GRAS 265 salfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveees 355
                        +a+fd+l+a lpr +  r+ vE++ +g ei+nvv cega+r+erhe++ +Wr+r+++aGF+++p++    + a+  l++ + + gy+v ee+
  GRMZM2G013016_P01 429 AAVFDALDAALPRYDARRARVEQFHFGAEIRNVVGCEGAARVERHERADQWRRRMSRAGFQSMPIRMA--ARAREWLEENAgGGGYTVAEEK 518
                        *****************************************************************765..567888888887999******* PP

               GRAS 356 gslvlgWkdrpLvsvSaWr 374
                        g+lvlgWk++p++++S+W+
  GRMZM2G013016_P01 519 GCLVLGWKGKPVIAASCWK 537
                        ******************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098558.739135518IPR005202Transcription factor GRAS
PfamPF035141.2E-101161537IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 538 aa     Download sequence    Send to blast
MGTSEQPCTS TPNSFTTTSS SYVTSQQIHH LPQHDSVVCT EPGLGFPYYY VTDRQQDAAF  60
DGDEVELGFQ ASKATRVDYY SSPYQLSWPL ARAAAAESSR VRKKRFWDVL ESCKQKVEAM  120
EAMESPLVAF QEAEDGGAVV GDGGGGGGGR GSGGGADGMR LVQLLVACAE AVACRDRAQA  180
AALLRELQAG APVHGTAFQR VASCFVQGLA DRLALAHPPA LGPASMAFCI PPSCAGRDGG  240
ARAEALALAY DLCPYLRFAH FVANASILEA FEGETNVHVL DLGMTLGLDR AHQWRALLDG  300
LAARAGAAAR PARVRVTAVG APADAMRAVG RELLAYAEGL GMCLEFRAVD RSLESLHIDD  360
LGIAADEAVA INSVLELHCV VKESRGALNS VLQTIRKLSP KAFVLVEQDA GHNGPFFLGR  420
FMEALHYYAA VFDALDAALP RYDARRARVE QFHFGAEIRN VVGCEGAARV ERHERADQWR  480
RRMSRAGFQS MPIRMAARAR EWLEENAGGG GYTVAEEKGC LVLGWKGKPV IAASCWKC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A2e-5316853626378Protein SCARECROW
5b3h_A2e-5316853625377Protein SCARECROW
5b3h_D2e-5316853625377Protein SCARECROW
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1147154GGRGSGGG
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G013016
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G013016_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0037910.0AP003791.4 Oryza sativa Japonica Group genomic DNA, chromosome 1, BAC clone:B1065G12.
GenBankAP0067570.0AP006757.2 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0551C06.
GenBankAP0149570.0AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008676175.20.0DELLA protein RGL3
TrEMBLA0A1D6N4950.0A0A1D6N495_MAIZE; Protein SCARECROW
STRINGGRMZM2G013016_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP56403354
Representative plantOGRP70521119
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14920.12e-56GRAS family protein