PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G008558_P02
Common NameGBP10, LOC103629895
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family GeBP
Protein Properties Length: 306aa    MW: 33172.4 Da    PI: 10.3748
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G008558_P02genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF57346.21.3e-14107183385
             DUF573   3 fqrlwseeDeivlLqGlidfkaktgkspsd.didafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehd 85 
                        +q+lwse De++lL G   fk++tg  p   d+ +++e +++s+  +  +  +  K++rLK Kf++ v         + s++h+
  GRMZM2G008558_P02 107 VQKLWSEVDEVALLTGAAAFKDRTGIAPRLpDMGELFESIRGSLAPHLDQAKVYYKLKRLKSKFQHSVLG-------DSSTAHE 183
                        79************************98877*********************************998766.......3344444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045049.7E-14108195IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    Send to blast
MPSKRPTPHA MDEAASASAA AARLRASTPR SKKRTSRSKS RGRSPNPNPS SRRERAADHG  60
SAAPSRKSDR KPNRSFPDSA TLATAMASVP AASAPSSGGG RGSAGAVQKL WSEVDEVALL  120
TGAAAFKDRT GIAPRLPDMG ELFESIRGSL APHLDQAKVY YKLKRLKSKF QHSVLGDSST  180
AHEHRLRDLG AALWGAELTR PEENAVVTAE ETTDPDEGFI DEDREGSVKL PMVKEVLGEY  240
WRLNGQTMSG VSLEKGLVLL GSQQASVVEV KWRRQLEADM RMQMRRHDLE KEVYGLLIDA  300
IKGLGP
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.1038830.0meristem| sheath| shoot
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G008558
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G008558_P02
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7280570.0KJ728057.1 Zea mays clone pUT6203 GeBP transcription factor (GBP10) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008649213.10.0STOREKEEPER protein
RefseqXP_008649214.10.0STOREKEEPER protein
RefseqXP_020395036.10.0STOREKEEPER protein
TrEMBLA0A3L6E7W10.0A0A3L6E7W1_MAIZE; Putative transcription factor
TrEMBLK7V0G20.0K7V0G2_MAIZE; GeBP transcription factor (Fragment)
STRINGGRMZM2G008558_P020.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP26822763
Representative plantOGRP1273145
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66420.13e-09DNA-binding storekeeper protein-related transcriptional regulator