PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AT1G66420.1 | ||||||||
Common Name | F28G11.12, T27F4.16 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | GeBP | ||||||||
Protein Properties | Length: 282aa MW: 32413 Da PI: 7.3089 | ||||||||
Description | DNA-binding storekeeper protein-related transcriptional regulator | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF573 | 111.6 | 5.3e-35 | 86 | 175 | 2 | 98 |
DUF573 2 lfqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiWgs 98 +fqrlwseeDeiv+LqG+i+f++ tgksp++d ++f+efvk+sisf++s +q++ Ki +LK+K+++k+k+ fs+ h+qk+f+l+++iWg+ AT1G66420.1 86 YFQRLWSEEDEIVMLQGIIKFEDVTGKSPFEDRHGFIEFVKNSISFEASVQQYIGKISQLKRKYTRKRKN-------GFSEGHEQKCFKLAMSIWGT 175 89******************************************************************99.......9*****************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04504 | 7.3E-26 | 87 | 174 | IPR007592 | Protein of unknown function DUF573 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 282 aa Download sequence Send to blast |
MSKKHLKPLE TCFEDEEDDV IYLPPGLVTG ATSKKNEEFC GGSGKVQPSE MKRRSEGTST 60 DMTSKRAKKV SAEDEKKVGE WTKNPYFQRL WSEEDEIVML QGIIKFEDVT GKSPFEDRHG 120 FIEFVKNSIS FEASVQQYIG KISQLKRKYT RKRKNGFSEG HEQKCFKLAM SIWGTKETSK 180 KTDLCSSPKG KKVKEEDGDV TNSDWFENSF LLPSIESLGV DSVKRKWNVV PMEFKKKIEE 240 RLELLEADES ECKKMEEMLK VKNSECVKQK TNLLNEVIDV MT |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 18408506 | 0.0 | ||||
Expression Atlas | AT1G66420 | - | ||||
AtGenExpress | AT1G66420 | - |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00214 | DAP | 27203113 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AT1G66420.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
T-DNA Express | AT1G66420 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC020665 | 0.0 | AC020665.6 Arabidopsis thaliana chromosome 1 BAC T27F4 genomic sequence, complete sequence. | |||
GenBank | AC074025 | 0.0 | AC074025.1 Arabidopsis thaliana chromosome 1 BAC F28G11 genomic sequence, complete sequence. | |||
GenBank | CP002684 | 0.0 | CP002684.1 Arabidopsis thaliana chromosome 1 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_176815.1 | 0.0 | DNA-binding storekeeper protein-related transcriptional regulator | ||||
Swissprot | Q9C517 | 0.0 | STKLE_ARATH; Probable transcription factor At1g66420 | ||||
TrEMBL | A0A178W2Y0 | 0.0 | A0A178W2Y0_ARATH; Uncharacterized protein | ||||
STRING | AT1G66420.1 | 0.0 | (Arabidopsis thaliana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM313 | 28 | 181 | Representative plant | OGRP4222 | 5 | 23 |
Link Out ? help Back to Top | |
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Phytozome | AT1G66420.1 |
Entrez Gene | 842960 |
iHOP | AT1G66420 |
wikigenes | AT1G66420 |
Publications ? help Back to Top | |||
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