PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G007406_P01
Common NameEREB173, ZEAMMB73_562257, Zm.86030
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family ERF
Protein Properties Length: 258aa    MW: 26660.1 Da    PI: 4.9479
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G007406_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.12.2e-183685255
                AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                        y+GVr ++ +g+Wv+eIr p   ++++r++lg++ t+e Aa+a++aa ++l+g
  GRMZM2G007406_P01 36 PYRGVRMRS-WGSWVSEIRAP---NQKRRIWLGSYATPEAAARAYDAALLCLKG 85
                       59****998.**********9...336************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103222.1023693IPR001471AP2/ERF domain
SMARTSM003804.8E-353699IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.9E-293694IPR001471AP2/ERF domain
PRINTSPR003671.9E-83748IPR001471AP2/ERF domain
SuperFamilySSF541711.31E-193794IPR016177DNA-binding domain
PfamPF008471.6E-113785IPR001471AP2/ERF domain
CDDcd000187.33E-193793No hitNo description
PRINTSPR003671.9E-85975IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 258 aa     Download sequence    Send to blast
MMVKNPSSNG VLTATAFSDS KARPERGVGG EAAGRPYRGV RMRSWGSWVS EIRAPNQKRR  60
IWLGSYATPE AAARAYDAAL LCLKGSNAVL NFPAAASSSS SSTSASSSHR RAHSRGHPDD  120
DPPAAAGGGM SPRSIQRAAA AAAAAIDDDA GMGASAADDR CSSSAGATTP TSASLSTQGS  180
TADHVGQEQH ATTTSAAAST GSPPEGKEEL WTDLDLEAFA SPKFMDLLMD TGAAPYSSTW  240
EEPEDDGDGE LMRLWSFC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A4e-142693672Ethylene-responsive transcription factor ERF096
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.860300.0endosperm
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G007406
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G007406_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7276600.0KJ727660.1 Zea mays clone pUT5587 AP2-EREBP transcription factor (EREB173) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023156839.10.0ethylene-responsive transcription factor ERF014
TrEMBLK7W0Y90.0K7W0Y9_MAIZE; AP2-EREBP transcription factor
STRINGGRMZM2G007406_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP108303040
Representative plantOGRP1277745
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21910.14e-21ERF family protein