PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G006578_P03
Common NameLOC100272950
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family bZIP
Protein Properties Length: 486aa    MW: 54022 Da    PI: 7.3623
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G006578_P03genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_134.93.4e-11183226141
                        XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHH...HHHHHHHH CS
             bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLee...kvkeLeae 41 
                        e++ k  rr+++NReAAr+sR+RKka+i++Le    + ++Le+e
  GRMZM2G006578_P03 183 ERDPKTLRRLAQNREAARKSRLRKKAYIQQLESsriRLAQLEQE 226
                        6777999************************9633355555555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1703.0E-8179231No hitNo description
SMARTSM003382.6E-7183274IPR004827Basic-leucine zipper domain
PfamPF001703.2E-8184226IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.082185227IPR004827Basic-leucine zipper domain
SuperFamilySSF579593.38E-7188229No hitNo description
PROSITE patternPS000360190205IPR004827Basic-leucine zipper domain
PfamPF141442.9E-28283357IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0006310anatomytassel floret
PO:0009001anatomyfruit
PO:0009009anatomyplant embryo
PO:0009066anatomyanther
PO:0009084anatomypericarp
PO:0009089anatomyendosperm
PO:0020126anatomytassel inflorescence
PO:0020127anatomyprimary root
PO:0001007developmental stagepollen development stage
PO:0001009developmental stageD pollen mother cell meiosis stage
PO:0001094developmental stageplant embryo coleoptilar stage
PO:0001095developmental stageplant embryo true leaf formation stage
PO:0001180developmental stageplant proembryo stage
PO:0007001developmental stageearly whole plant fruit ripening stage
PO:0007022developmental stageseed imbibition stage
PO:0007031developmental stagemid whole plant fruit ripening stage
PO:0007032developmental stagewhole plant fruit formation stage up to 10%
PO:0007072developmental stageLP.18 eighteen leaves visible stage
PO:0007104developmental stageLP.15 fifteen leaves visible stage
PO:0007106developmental stageLP.03 three leaves visible stage
PO:0007112developmental stage1 main shoot growth stage
PO:0007633developmental stageendosperm development stage
Sequence ? help Back to Top
Protein Sequence    Length: 486 aa     Download sequence    Send to blast
MVSGGSTKEQ QHEMNISFGM MNQHHQPPSS SSSSSMHAAA ASFMSGKEAS GAYDHLGELD  60
QALFMYLDHG SSHGGGATQQ ERRQTLNIFP SQPMHVEPSP KGEISLVLSP APVGSKQPRS  120
PDHHHHQQAA MEELAGSRRQ QEHLHLQHHQ PFAAAAEPAA PGMIKDVKPL AKKDHRRGTS  180
TAERDPKTLR RLAQNREAAR KSRLRKKAYI QQLESSRIRL AQLEQELHTA RAQGVFFPNS  240
GILADQGVAG KGVPIGGIDG LSSEAAMFDV EYGRWQEEHY RLMYELRAAL QQHLPEGELQ  300
MYVESCLAHH DEMVGIKEGA IKGDVFHLIS GVWRSPAERC FLWLGGFRPS EVIKMLLSHV  360
EPLTEQQIVG VYGLQQSALE TEEALSQGLE ALYQSLSDTV VSDALSCPSN VSNYMGQMAV  420
AMNKLSTLEG FVRQAENLRQ QTLHRLHQVL TTRQMARSLL AVSDYFHRLR TLSSLWVTRP  480
RAPQEQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.275920.0endosperm
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G006578
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Specifically expressed in roots. {ECO:0000269|PubMed:12777042}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to as1-like elements (5'-TGACGTAAgggaTGACGCA-3') in promoters of target genes. Regulates transcription in response to plant signaling molecules salicylic acid (SA), methyl jasmonate (MJ) and auxin (2,4D) only in leaves. Prevents lateral branching and may repress defense signaling. {ECO:0000269|PubMed:12777042}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00491DAPTransfer from AT5G06839Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G006578_P03
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0434360.0BT043436.2 Zea mays full-length cDNA clone ZM_BFc0188L07 mRNA, complete cds.
GenBankBT0638980.0BT063898.1 Zea mays full-length cDNA clone ZM_BFc0118B03 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008651077.10.0putative bZIP transcription factor superfamily protein isoform X1
SwissprotQ52MZ21e-172TGA10_TOBAC; bZIP transcription factor TGA10
TrEMBLA0A1D6I6Z40.0A0A1D6I6Z4_MAIZE; BZIP transcription factor family protein
STRINGGRMZM2G006578_P030.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP78763543
Representative plantOGRP75161218
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06839.31e-149bZIP family protein