PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G006578_P01 | ||||||||
Common Name | LOC100272950 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | bZIP | ||||||||
Protein Properties | Length: 406aa MW: 45502.8 Da PI: 7.6048 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 35.2 | 2.7e-11 | 103 | 146 | 1 | 41 |
XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHH...HHHHHHHH CS bZIP_1 1 ekelkrerrkqkNReAArrsRqRKkaeieeLee...kvkeLeae 41 e++ k rr+++NReAAr+sR+RKka+i++Le + ++Le+e GRMZM2G006578_P01 103 ERDPKTLRRLAQNREAARKSRLRKKAYIQQLESsriRLAQLEQE 146 6778999************************9633355555555 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.20.5.170 | 2.4E-8 | 99 | 151 | No hit | No description |
SMART | SM00338 | 2.6E-7 | 103 | 194 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF00170 | 2.5E-8 | 104 | 146 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 9.082 | 105 | 147 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 2.65E-7 | 108 | 149 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 110 | 125 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF14144 | 2.2E-28 | 203 | 277 | IPR025422 | Transcription factor TGA like domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0006340 | anatomy | adult vascular leaf | ||||
PO:0006354 | anatomy | ear floret | ||||
PO:0009025 | anatomy | vascular leaf | ||||
PO:0009074 | anatomy | style | ||||
PO:0009084 | anatomy | pericarp | ||||
PO:0025142 | anatomy | leaf tip | ||||
PO:0001052 | developmental stage | vascular leaf expansion stage | ||||
PO:0007001 | developmental stage | early whole plant fruit ripening stage | ||||
PO:0007016 | developmental stage | whole plant flowering stage | ||||
PO:0007101 | developmental stage | LP.09 nine leaves visible stage | ||||
PO:0007116 | developmental stage | LP.11 eleven leaves visible stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 406 aa Download sequence Send to blast |
MDAETLNIFP SQPMHVEPSP KGEISLVLSP APVGSKQPRS PDHHHHQQAA MEELAGSRRQ 60 QEHLHLQHHQ PFAAAAEPAA PGMIKDVKPL AKKDHRRGTS TAERDPKTLR RLAQNREAAR 120 KSRLRKKAYI QQLESSRIRL AQLEQELHTA RAQGVFFPNS GILADQGVAG KGVPIGGIDG 180 LSSEAAMFDV EYGRWQEEHY RLMYELRAAL QQHLPEGELQ MYVESCLAHH DEMVGIKEGA 240 IKGDVFHLIS GVWRSPAERC FLWLGGFRPS EVIKMLLSHV EPLTEQQIVG VYGLQQSALE 300 TEEALSQGLE ALYQSLSDTV VSDALSCPSN VSNYMGQMAV AMNKLSTLEG FVRQAENLRQ 360 QTLHRLHQVL TTRQMARSLL AVSDYFHRLR TLSSLWVTRP RAPQEQ |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Zm.27592 | 0.0 | endosperm |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G006578 |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Specifically expressed in roots. {ECO:0000269|PubMed:12777042}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that binds to as1-like elements (5'-TGACGTAAgggaTGACGCA-3') in promoters of target genes. Regulates transcription in response to plant signaling molecules salicylic acid (SA), methyl jasmonate (MJ) and auxin (2,4D) only in leaves. Prevents lateral branching and may repress defense signaling. {ECO:0000269|PubMed:12777042}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00491 | DAP | Transfer from AT5G06839 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G006578_P01 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT043436 | 0.0 | BT043436.2 Zea mays full-length cDNA clone ZM_BFc0188L07 mRNA, complete cds. | |||
GenBank | BT063898 | 0.0 | BT063898.1 Zea mays full-length cDNA clone ZM_BFc0118B03 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008651077.1 | 0.0 | putative bZIP transcription factor superfamily protein isoform X1 | ||||
Swissprot | Q52MZ2 | 1e-161 | TGA10_TOBAC; bZIP transcription factor TGA10 | ||||
TrEMBL | B4G248 | 0.0 | B4G248_MAIZE; BZIP transcription factor family protein | ||||
STRING | GRMZM2G006578_P03 | 0.0 | (Zea mays) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06839.3 | 1e-146 | bZIP family protein |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G006578_P01 |