PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G005207_P01
Common NameLOC100383957, ZEAMMB73_686444
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family WRKY
Protein Properties Length: 324aa    MW: 34391.6 Da    PI: 6.3813
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G005207_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY69.74.2e-22112175359
                        -SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEE....EEEEES--SS- CS
               WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvv....eitYegeHnhe 59 
                        Dgy+WrKYGqK+++g+ +prsYYrC ++   gC++k+ v+r+++d+ +     +++Y  eH+++
  GRMZM2G005207_P01 112 DGYQWRKYGQKQIEGAMYPRSYYRCIQSakqGCQAKRTVQRNDDDGATAppeyTVVYVAEHTCT 175
                        9************************8777789************99874333389999999986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.807.2E-2395175IPR003657WRKY domain
SuperFamilySSF1182901.96E-20105175IPR003657WRKY domain
SMARTSM007745.6E-27110176IPR003657WRKY domain
PfamPF031064.0E-23112174IPR003657WRKY domain
PROSITE profilePS5081119.095112165IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 324 aa     Download sequence    Send to blast
MALVLGREEE LLAQLRALLT FLPPPASPPA PAAPVKVESI MGTSGGGRRL GSKRDRDDDS  60
EAEAEQHGDE PAAAQPHYCP HPPPPCKRTR RRKNKKKRQQ SKCLVTTVPD FDGYQWRKYG  120
QKQIEGAMYP RSYYRCIQSA KQGCQAKRTV QRNDDDGATA PPEYTVVYVA EHTCTANDDA  180
LEAPPVILET TTSVVVRAPA AHTDPVVVVV PATATTSAAA AASACSTTVT TGTESPAISG  240
DDVACCWSSS GSSSSGYSYA DDSCCCCCCD GLLAAVVHGG CGGSWAPGPA DSVSVPSFRL  300
QEMEDLTGPI RSPVHVVPRA WLDR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A1e-141121741068OsWRKY45
Search in ModeBase
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G005207
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G005207_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0687200.0BT068720.1 Zea mays full-length cDNA clone ZM_BFb0370C20 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001170045.10.0uncharacterized protein LOC100383957
TrEMBLC0PKA10.0C0PKA1_MAIZE; Putative WRKY transcription factor 38
TrEMBLK4JC580.0K4JC58_MAIZE; WRKY-type transcription factor (Fragment)
STRINGGRMZM2G005207_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP57603058
Representative plantOGRP1314045
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40750.11e-16WRKY DNA-binding protein 54