PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G005126_P01
Common NameC3H24, LOC103641333, ZEAMMB73_232072, Zm.34165
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family C3H
Protein Properties Length: 962aa    MW: 106996 Da    PI: 9.8647
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G005126_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH23.59.6e-08210230425
                        ---SGGGGTS--TTTTT-SS-S CS
            zf-CCCH   4 elCrffartGtCkyGdrCkFaH 25 
                        ++Cr+f + G C++G++C+F H
  GRMZM2G005126_P01 210 RPCRDFVA-GRCRRGSNCRFLH 230
                        89******.************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010315.291206233IPR000571Zinc finger, CCCH-type
SMARTSM003561.9E-4207232IPR000571Zinc finger, CCCH-type
PfamPF006424.0E-5210230IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.3E-5210232IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.605290317IPR000571Zinc finger, CCCH-type
SMARTSM003560.066291316IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.3E-4294316IPR000571Zinc finger, CCCH-type
PfamPF161315.0E-7325374IPR032297Torus domain
PROSITE profilePS5010315.432349376IPR000571Zinc finger, CCCH-type
SMARTSM003567.0E-4349375IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.06E-7350374IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.5E-4352375IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0006505anatomycentral spike of ear inflorescence
PO:0007006developmental stageIL.00 inflorescence just visible stage
PO:0007072developmental stageLP.18 eighteen leaves visible stage
Sequence ? help Back to Top
Protein Sequence    Length: 962 aa     Download sequence    Send to blast
MTNETRKHRS KWDTKEGSDV VEISDDESPD KTGVHRKGGD LHTKPDTSMH HRGAGHEKEH  60
ADGSNEDMKE MQHKAPSERS QPLRMVDERD NNEWSKATGN QGTNRYADDR RRGDGWGTAP  120
SRDYSSARAP SDPDAWRQRS RSPSPRGVWN KSRRNRSRSR SRSRSRSRNR SRSRSRSIGR  180
GRGRSRSPYI ADRGSEWRVE RGRTSGGPVR PCRDFVAGRC RRGSNCRFLH EDGGHRPFDD  240
HYPADPRERY GYQSKEFMDT RGPNDYLRSR QSRDRYDDRP WERSEPRRDY RYPEQCFNFA  300
KGKCMRGASC IFAHSNSASH GRWRDETRES AHDRFGPDSS YGNRTEHRRV NKNPCKFFAE  360
GCCRRGENCS YLHEEAPHSQ IGVSAPDEAL NYSDGHAARG NYSNWGEQNN AVHATSQILS  420
RDDRESPISQ SIGRNDSRND YENQHSKDAG KSQYQIIHQE DFGSPGQKKH EDAISQQPQL  480
LTPVQTTALS MHNEKVSEMD SQNAPSSIGG LSMQSGVRSA NIIAEQSLGQ ILQRHDPIPH  540
IPGPQTLPIT TQPQNVTSSF PSNSHVQQNN FPIHQNRQEQ FVVPHAAANI STPSMQSQPI  600
ASHMGHIQRG GYGIEPQALP NISTHNGHNF NVASQVPPNI PTAVHAGQTQ VTIDMPRLGQ  660
DSGPQSIHNM EMQPMSPNVQ SQSLQGLPLV PASSSADMAG VPVPHNAVKS EEVSRVTASL  720
AQYFGNTAFG AGTVGLQPSQ PNMNASLMAT PPVVPPPVQP NPWPWAQQQT GIVQPGLPVP  780
PQQQQQQQQA PQRQQQQQAP QSFQTLIAVG GSNGNSMLIP NAGASVGPAT VAAKETAPPE  840
SKKGEKKNAD AEKKNGDAER RNAEAEAQED GDKGKKGKDS KQLKMFKVAL ADFVKEALKP  900
TWKDGQMSRE VHKTIVKKVV DKVTSTVENT PPTKEKIDVY MTYSKEKLNK LVQAYVGKYA  960
KA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1165175RSRNRSRSRSR
2167175RNRSRSRSR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.186750.0meristem| ovary| shoot| tassel
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G005126
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G005126_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7270140.0KJ727014.1 Zea mays clone pUT3995 C3H transcription factor (C3H24) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008662908.10.0zinc finger CCCH domain-containing protein 55
RefseqXP_008662909.10.0zinc finger CCCH domain-containing protein 55
RefseqXP_008662910.10.0zinc finger CCCH domain-containing protein 55
RefseqXP_020401483.10.0zinc finger CCCH domain-containing protein 55
RefseqXP_023156978.10.0zinc finger CCCH domain-containing protein 55
SwissprotQ6YYC00.0C3H55_ORYSJ; Zinc finger CCCH domain-containing protein 55
TrEMBLA0A3L6G6940.0A0A3L6G694_MAIZE; Zinc finger CCCH domain-containing protein 55
TrEMBLK7TI820.0K7TI82_MAIZE; C3H transcription factor
STRINGGRMZM2G005126_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP77663443
Representative plantOGRP1203666
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33835.19e-08C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]