PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G004531_P01 | ||||||||
Common Name | LOC100191556, NAC79 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | NAC | ||||||||
Protein Properties | Length: 709aa MW: 77981.6 Da PI: 4.4257 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 145.8 | 2.2e-45 | 10 | 135 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 ppGfrF+Ptdeelv ++Lk+++++ + + +++v++yk++P++Lp+ ++++++++w+fFs+ d+ky++g+r++r+t +gyWkatgkd+ GRMZM2G004531_P01 10 PPGFRFSPTDEELVLYFLKRRIASGRPSP--YVADVEVYKSHPSHLPErsALQTGDRQWFFFSRMDRKYPNGSRASRTTGDGYWKATGKDRF 99 8*********************9999655..69*************94357888999*********************************** PP NAM 92 vlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 ++ +g++vg kktLv+++grap+ge+tdWvmhey+l GRMZM2G004531_P01 100 ICG-GGRAVGNKKTLVYHHGRAPRGERTDWVMHEYTL 135 **9.99*****************************87 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 2.75E-51 | 7 | 158 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 50.744 | 9 | 158 | IPR003441 | NAC domain |
Pfam | PF02365 | 4.5E-24 | 10 | 135 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0070301 | Biological Process | cellular response to hydrogen peroxide | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005789 | Cellular Component | endoplasmic reticulum membrane | ||||
GO:0016021 | Cellular Component | integral component of membrane | ||||
GO:0003677 | Molecular Function | DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0000037 | anatomy | shoot apex | ||||
PO:0006310 | anatomy | tassel floret | ||||
PO:0006339 | anatomy | juvenile vascular leaf | ||||
PO:0006340 | anatomy | adult vascular leaf | ||||
PO:0006341 | anatomy | primary shoot system | ||||
PO:0006354 | anatomy | ear floret | ||||
PO:0006505 | anatomy | central spike of ear inflorescence | ||||
PO:0008018 | anatomy | transition vascular leaf | ||||
PO:0009001 | anatomy | fruit | ||||
PO:0009009 | anatomy | plant embryo | ||||
PO:0009025 | anatomy | vascular leaf | ||||
PO:0009054 | anatomy | inflorescence bract | ||||
PO:0009066 | anatomy | anther | ||||
PO:0009074 | anatomy | style | ||||
PO:0009084 | anatomy | pericarp | ||||
PO:0009089 | anatomy | endosperm | ||||
PO:0020040 | anatomy | leaf base | ||||
PO:0020104 | anatomy | leaf sheath | ||||
PO:0020126 | anatomy | tassel inflorescence | ||||
PO:0020127 | anatomy | primary root | ||||
PO:0020136 | anatomy | ear inflorescence | ||||
PO:0020142 | anatomy | stem internode | ||||
PO:0020148 | anatomy | shoot apical meristem | ||||
PO:0025142 | anatomy | leaf tip | ||||
PO:0025287 | anatomy | seedling coleoptile | ||||
PO:0001007 | developmental stage | pollen development stage | ||||
PO:0001009 | developmental stage | D pollen mother cell meiosis stage | ||||
PO:0001052 | developmental stage | vascular leaf expansion stage | ||||
PO:0001053 | developmental stage | vascular leaf post-expansion stage | ||||
PO:0001083 | developmental stage | inflorescence development stage | ||||
PO:0001094 | developmental stage | plant embryo coleoptilar stage | ||||
PO:0001095 | developmental stage | plant embryo true leaf formation stage | ||||
PO:0001180 | developmental stage | plant proembryo stage | ||||
PO:0007001 | developmental stage | early whole plant fruit ripening stage | ||||
PO:0007003 | developmental stage | IL.03 full inflorescence length reached stage | ||||
PO:0007006 | developmental stage | IL.00 inflorescence just visible stage | ||||
PO:0007015 | developmental stage | radicle emergence stage | ||||
PO:0007016 | developmental stage | whole plant flowering stage | ||||
PO:0007022 | developmental stage | seed imbibition stage | ||||
PO:0007026 | developmental stage | FL.00 first flower(s) open stage | ||||
PO:0007031 | developmental stage | mid whole plant fruit ripening stage | ||||
PO:0007032 | developmental stage | whole plant fruit formation stage up to 10% | ||||
PO:0007045 | developmental stage | coleoptile emergence stage | ||||
PO:0007063 | developmental stage | LP.07 seven leaves visible stage | ||||
PO:0007065 | developmental stage | LP.05 five leaves visible stage | ||||
PO:0007072 | developmental stage | LP.18 eighteen leaves visible stage | ||||
PO:0007094 | developmental stage | LP.01 one leaf visible stage | ||||
PO:0007101 | developmental stage | LP.09 nine leaves visible stage | ||||
PO:0007104 | developmental stage | LP.15 fifteen leaves visible stage | ||||
PO:0007106 | developmental stage | LP.03 three leaves visible stage | ||||
PO:0007112 | developmental stage | 1 main shoot growth stage | ||||
PO:0007116 | developmental stage | LP.11 eleven leaves visible stage | ||||
PO:0007123 | developmental stage | LP.06 six leaves visible stage | ||||
PO:0007633 | developmental stage | endosperm development stage | ||||
PO:0021004 | developmental stage | inflorescence initiation stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 709 aa Download sequence Send to blast |
METPPRGRWP PGFRFSPTDE ELVLYFLKRR IASGRPSPYV ADVEVYKSHP SHLPERSALQ 60 TGDRQWFFFS RMDRKYPNGS RASRTTGDGY WKATGKDRFI CGGGRAVGNK KTLVYHHGRA 120 PRGERTDWVM HEYTLLADAL PPAAQGREFY ALYKLFQKSG AGPKNGEQYG APFREEDWLD 180 DDDERVIAGA AANPVPNTNS PPSTMEEHAI TDRELPIEGL DQPLSDFGND PELFSEAQPV 240 SSHGQGQGWL SEGGDKAEVV DASISNDVVV VAENTCTDIS LGDIEQFLMQ ISDDQQNDEL 300 FSDLSTPLPK LQFQCDDRQV WLDAEMGHEV YAADPTASSG AVVTAECTVT ELPLGDLEGL 360 LLQIANDQHM VESQSDLSAP TPHHNFNQAD IGDLHESHGA RVGNLSCIVQ ESTFCEPRTE 420 PSDQFPQSNV TNLPFSGEAN SSEGTSVAHS VSGLISYHSQ DADEEFLEIN DFFDLEDVGQ 480 NANCMTTEYM MSATNGMFDN LEYSDASSFL PGSFDTVGLV AENQYFDTDY SGIQNQGYQN 540 TTEVRTYNQA ALTVRSHMKH DHVVLSSHAS GTLNIHAANE LHNQSSTSSQ SWFNAALSAL 600 LDSVPSSPAL AAEIENTVIN RTLQRISSFR PHQTAGEENT FINRTLQHIS SFRSQQATGE 660 EPGTPSIQVT RGGRLMFISL LVILASVIWT FTSGSALNFC KGLWKSSST |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 9e-44 | 10 | 135 | 16 | 140 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Zm.23701 | 0.0 | ear| meristem| ovary| root| shoot| tassel |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G004531 |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00179 | DAP | Transfer from AT1G34190 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G004531_P01 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT033669 | 0.0 | BT033669.1 Zea mays full-length cDNA clone ZM_BFc0115C07 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001130458.1 | 0.0 | uncharacterized protein LOC100191556 | ||||
Refseq | XP_008650797.1 | 0.0 | putative NAC domain transcription factor superfamily protein isoform X2 | ||||
Refseq | XP_020395875.1 | 0.0 | putative NAC domain transcription factor superfamily protein isoform X2 | ||||
TrEMBL | B4F981 | 0.0 | B4F981_MAIZE; NAC transcription factor | ||||
STRING | GRMZM2G004531_P01 | 0.0 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP9128 | 28 | 40 | Representative plant | OGRP17037 | 3 | 3 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G34190.1 | 7e-61 | NAC domain containing protein 17 |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G004531_P01 |
Entrez Gene | 100191556 |