PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G002606_P01
Common NameZm.30687
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family LSD
Protein Properties Length: 58aa    MW: 5970.82 Da    PI: 4.2626
Description LSD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G002606_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-LSD129.21.5e-09327125
            zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
                       Cg+Cr l +YP+GA +V+C  C t+
  GRMZM2G002606_P01  3 CGSCRQLVAYPTGAVHVQCFGCLTI 27
                       *******************999876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
TIGRFAMsTIGR010534.2E-11130IPR005735Zinc finger, LSD1-type
PfamPF069434.9E-9327IPR005735Zinc finger, LSD1-type
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0006339anatomyjuvenile vascular leaf
PO:0006340anatomyadult vascular leaf
PO:0006505anatomycentral spike of ear inflorescence
PO:0008018anatomytransition vascular leaf
PO:0009001anatomyfruit
PO:0009025anatomyvascular leaf
PO:0009089anatomyendosperm
PO:0020127anatomyprimary root
PO:0020142anatomystem internode
PO:0025142anatomyleaf tip
PO:0001052developmental stagevascular leaf expansion stage
PO:0001053developmental stagevascular leaf post-expansion stage
PO:0001083developmental stageinflorescence development stage
PO:0001095developmental stageplant embryo true leaf formation stage
PO:0007001developmental stageearly whole plant fruit ripening stage
PO:0007006developmental stageIL.00 inflorescence just visible stage
PO:0007031developmental stagemid whole plant fruit ripening stage
PO:0007063developmental stageLP.07 seven leaves visible stage
PO:0007072developmental stageLP.18 eighteen leaves visible stage
PO:0007101developmental stageLP.09 nine leaves visible stage
PO:0007106developmental stageLP.03 three leaves visible stage
PO:0007112developmental stage1 main shoot growth stage
PO:0007116developmental stageLP.11 eleven leaves visible stage
PO:0007633developmental stageendosperm development stage
Sequence ? help Back to Top
Protein Sequence    Length: 58 aa     Download sequence    Send to blast
MVCGSCRQLV AYPTGAVHVQ CFGCLTINLV LEGTQCSATD IDGTECLTCG TRGGSLES
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.306872e-96meristem| shoot
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G002606
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G002606_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008675493.13e-34proline-rich protein 36 isoform X5
STRINGGRMZM2G002606_P015e-34(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G21610.12e-10lsd one like 2