PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GRMZM2G001426_P01

Common Name

LOC103650192, Zm.83039

Organism

Zea mays

Taxonomic ID

4577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea

Family

GRAS

Protein Properties

Length: 475aa MW: 50563 Da PI: 5.7858

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GRMZM2G001426_P01	genome	MaizeSequence	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	408.2	8e-125	76	450	1	374
GRAS 1 lvelLlecAeavssgdlelaqalLarlsel..aspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPi 90 lv+lL++cA av++ d++ a+a La + a + + + R+a +ft AL++rl+ +++ + + pp + + +++++ ++ f+e+ P+ GRMZM2G001426_P01 76 LVHLLMSCAGAVEAADHAGASAHLADAHAAlaAVSPTSGIGRVAVHFTAALSRRLFPPTPSPSPSPPPPAPH-AADADRAFLYHRFYEAGPY 166 68*********************99988745555589**************777777655555554.67899999999**** PP GRAS 91 lkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlv 182 lkf+h+taNqaIleav+g+++vHiiDf+i+qGlQWpaL+qaLa Rp+gppslR+Tg+g+p++ ++ l+ +g rLa++A++++v+f+f+ ++ GRMZM2G001426_P01 167 LKFAHFTANQAILEAVQGCKHVHIIDFSIMQGLQWPALIQALALRPGGPPSLRLTGIGPPSPPGRDDLRDVGVRLADLARSVRVHFSFRGVA 258 **************************************************************************************** PP GRAS 183 akrledleleeLrvkpgEalaVnlvlqlhrlldesvsles...erdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsl 271 a+rl+++++++L+v++gEa+aVn+vlqlhrll++ s+ + ++d+vL++v s++P+v++vveqeadhn++ Fl+rf+eal yysa+fdsl GRMZM2G001426_P01 259 ANRLDEVRPWMLQVSQGEAVAVNSVLQLHRLLADAPSSGDaraPIDAVLECVASVRPRVFTVVEQEADHNKPGFLDRFTEALFYYSAVFDSL 350 ****************************9988777766699******************************************* PP GRAS 272 eaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWk 363 +a + +++l+rei+++v+ ega rrerhe l +Wr+rl++ G+ +vpl+ +a qa++l+ ++++g+ vee +g+l+lgW+ GRMZM2G001426_P01 351 DAA---SGGAGDAAAEAYLEREICDIVCGEGAGRRERHEPLWRWRDRLGRTGLAAVPLGANALRQARMLVGLFSGEGHCVEEAEGCLTLGWH 439 998...235555666777********************************************************************** PP GRAS 364 drpLvsvSaWr 374 +rpL+s+SaWr GRMZM2G001426_P01 440 GRPLFSASAWR 450 ********8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	59.673	50	430	IPR005202	Transcription factor GRAS
Pfam	PF03514	2.8E-122	76	450	IPR005202	Transcription factor GRAS

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated

Plant Ontology ? help Back to Top
PO Term	PO Category	PO Description
PO:0006505	anatomy	central spike of ear inflorescence
PO:0020126	anatomy	tassel inflorescence
PO:0020127	anatomy	primary root
PO:0020142	anatomy	stem internode
PO:0020148	anatomy	shoot apical meristem
PO:0001007	developmental stage	pollen development stage
PO:0007006	developmental stage	IL.00 inflorescence just visible stage
PO:0007065	developmental stage	LP.05 five leaves visible stage
PO:0007072	developmental stage	LP.18 eighteen leaves visible stage
PO:0007104	developmental stage	LP.15 fifteen leaves visible stage
PO:0007106	developmental stage	LP.03 three leaves visible stage
PO:0007112	developmental stage	1 main shoot growth stage

Sequence ? help Back to Top
Protein Sequence Length: 475 aa Download sequence Send to blast
MAMGGAFPFQ WPEGPADPVL DDVTLPPLPT AAPDAGVAAY YADAADVHAM HMALPDFAAA 60 LAAMRREEEE AAGIRLVHLL MSCAGAVEAA DHAGASAHLA DAHAALAAVS PTSGIGRVAV 120 HFTAALSRRL FPPTPSPSPS PPPPAPHAAD ADRAFLYHRF YEAGPYLKFA HFTANQAILE 180 AVQGCKHVHI IDFSIMQGLQ WPALIQALAL RPGGPPSLRL TGIGPPSPPG RDDLRDVGVR 240 LADLARSVRV HFSFRGVAAN RLDEVRPWML QVSQGEAVAV NSVLQLHRLL ADAPSSGDAR 300 APIDAVLECV ASVRPRVFTV VEQEADHNKP GFLDRFTEAL FYYSAVFDSL DAASGGAGDA 360 AAEAYLEREI CDIVCGEGAG RRERHEPLWR WRDRLGRTGL AAVPLGANAL RQARMLVGLF 420 SGEGHCVEEA EGCLTLGWHG RPLFSASAWR AEENNQSDSR SRSSGSEESN ISCSS

Sequence ? help Back to Top

Protein Sequence Length: 475 aa Download sequence Send to blast

MAMGGAFPFQ WPEGPADPVL DDVTLPPLPT AAPDAGVAAY YADAADVHAM HMALPDFAAA  60
LAAMRREEEE AAGIRLVHLL MSCAGAVEAA DHAGASAHLA DAHAALAAVS PTSGIGRVAV  120
HFTAALSRRL FPPTPSPSPS PPPPAPHAAD ADRAFLYHRF YEAGPYLKFA HFTANQAILE  180
AVQGCKHVHI IDFSIMQGLQ WPALIQALAL RPGGPPSLRL TGIGPPSPPG RDDLRDVGVR  240
LADLARSVRV HFSFRGVAAN RLDEVRPWML QVSQGEAVAV NSVLQLHRLL ADAPSSGDAR  300
APIDAVLECV ASVRPRVFTV VEQEADHNKP GFLDRFTEAL FYYSAVFDSL DAASGGAGDA  360
AAEAYLEREI CDIVCGEGAG RRERHEPLWR WRDRLGRTGL AAVPLGANAL RQARMLVGLF  420
SGEGHCVEEA EGCLTLGWHG RPLFSASAWR AEENNQSDSR SRSSGSEESN ISCSS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_A	8e-57	64	449	6	377	Protein SCARECROW
5b3h_D	8e-57	64	449	6	377	Protein SCARECROW
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Zm.83039	0.0	ear\| embryo\| ovary

Expression -- Microarray ? help Back to Top
Source	ID
Expression Atlas	GRMZM2G001426

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Ubiquitously expressed. Expressed in rosette leaves, roots, stems and inflorescences of greenhouse grown. {ECO:0000269\|PubMed:11877383, ECO:0000269\|PubMed:9237632, ECO:0000269\|PubMed:9490740}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator that acts as a repressor of the gibberellin (GA) signaling pathway. Transcription coactivator of the zinc finger transcription factors GAF1/IDD2 and ENY/IDD1 in regulation of gibberellin homeostasis and signaling (PubMed:25035403). No effect of the BOI proteins on its stability. Probably acts by participating in large multiprotein complexes that repress transcription of GA-inducible genes. Positively regulates XERICO expression. In contrast to RGA, it is less sensitive to GA. Its activity is probably regulated by other phytohormones such as auxin and ethylene. {ECO:0000269\|PubMed:11487693, ECO:0000269\|PubMed:11606551, ECO:0000269\|PubMed:11606552, ECO:0000269\|PubMed:14973286, ECO:0000269\|PubMed:15128937, ECO:0000269\|PubMed:16034591, ECO:0000269\|PubMed:17933900, ECO:0000269\|PubMed:25035403, ECO:0000269\|PubMed:9389651}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GRMZM2G001426_P01

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EU969816	0.0	EU969816.1 Zea mays clone 336035 mRNA sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001309202.1	0.0	uncharacterized protein LOC103650192
Swissprot	Q9LQT8	1e-125	GAI_ARATH; DELLA protein GAI
TrEMBL	A0A1D6NHK5	0.0	A0A1D6NHK5_MAIZE; DELLA protein RGA
STRING	GRMZM2G001426_P01	0.0	(Zea mays)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP998	38	138
Representative plant	OGRP1251	15	50

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G14920.1	1e-108	GRAS family protein

Link Out ? help Back to Top
Phytozome	GRMZM2G001426_P01
Entrez Gene	103650192

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Alexandrov NN, et al. Insights into corn genes derived from large-scale cDNA sequencing. Plant Mol. Biol., 2009. 69(1-2): p. 179-94 [PMID:18937034] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Gallego-Giraldo C, et al. Role of the gibberellin receptors GID1 during fruit-set in Arabidopsis. Plant J., 2014. 79(6): p. 1020-1032 [PMID:24961590] Fukazawa J, et al. DELLAs function as coactivators of GAI-ASSOCIATED FACTOR1 in regulation of gibberellin homeostasis and signaling in Arabidopsis. Plant Cell, 2014. 26(7): p. 2920-38 [PMID:25035403] Marín-de la Rosa N, et al. Genome Wide Binding Site Analysis Reveals Transcriptional Coactivation of Cytokinin-Responsive Genes by DELLA Proteins. PLoS Genet., 2015. 11(7): p. e1005337 [PMID:26134422] Shi H,Wei Y,Wang Q,Reiter RJ,He C Melatonin mediates the stabilization of DELLA proteins to repress the floral transition in Arabidopsis. J. Pineal Res., 2016. 60(3): p. 373-9 [PMID:26887824] Lee SA, et al. Interplay between ABA and GA Modulates the Timing of Asymmetric Cell Divisions in the Arabidopsis Root Ground Tissue. Mol Plant, 2016. 9(6): p. 870-84 [PMID:26970019] Qu J,Kang SG,Hah C,Jang JC Molecular and cellular characterization of GA-Stimulated Transcripts GASA4 and GASA6 in Arabidopsis thaliana. Plant Sci., 2016. 246: p. 1-10 [PMID:26993231] Shahnejat-Bushehri S,Nobmann B,Devi Allu A,Balazadeh S JUB1 suppresses Pseudomonas syringae-induced defense responses through accumulation of DELLA proteins. Plant Signal Behav, 2016. 11(6): p. e1181245 [PMID:27159137] Shahnejat-Bushehri S,Tarkowska D,Sakuraba Y,Balazadeh S Arabidopsis NAC transcription factor JUB1 regulates GA/BR metabolism and signalling. Nat Plants, 2016. 2: p. 16013 [PMID:27249348] Wang H, et al. The DELLA-CONSTANS Transcription Factor Cascade Integrates Gibberellic Acid and Photoperiod Signaling to Regulate Flowering. Plant Physiol., 2016. 172(1): p. 479-88 [PMID:27406167] Li W,Wang H,Yu D Arabidopsis WRKY Transcription Factors WRKY12 and WRKY13 Oppositely Regulate Flowering under Short-Day Conditions. Mol Plant, 2016. 9(11): p. 1492-1503 [PMID:27592586] Liu B,De Storme N,Geelen D Gibberellin Induces Diploid Pollen Formation by Interfering with Meiotic Cytokinesis. Plant Physiol., 2017. 173(1): p. 338-353 [PMID:27621423] Matsuoka K, et al. Differential Cellular Control by Cotyledon-Derived Phytohormones Involved in Graft Reunion of Arabidopsis Hypocotyls. Plant Cell Physiol., 2016. 57(12): p. 2620-2631 [PMID:27986917] Zentella R, et al. The Arabidopsis O-fucosyltransferase SPINDLY activates nuclear growth repressor DELLA. Nat. Chem. Biol., 2017. 13(5): p. 479-485 [PMID:28244988] Zhang Y, et al. GA-DELLA pathway is involved in regulation of nitrogen deficiency-induced anthocyanin accumulation. Plant Cell Rep., 2017. 36(4): p. 557-569 [PMID:28275852] Zhang L,Chen L,Yu D Transcription Factor WRKY75 Interacts with DELLA Proteins to Affect Flowering. Plant Physiol., 2018. 176(1): p. 790-803 [PMID:29133369] Nelson SK,Ariizumi T,Steber CM Biology in the Dry Seed: Transcriptome Changes Associated with Dry Seed Dormancy and Dormancy Loss in the Arabidopsis GA-Insensitive sleepy1-2 Mutant. Front Plant Sci, 2017. 8: p. 2158 [PMID:29312402] Liu B,De Storme N,Geelen D Cold-Induced Male Meiotic Restitution in Arabidopsis thaliana Is Not Mediated by GA-DELLA Signaling. Front Plant Sci, 2018. 9: p. 91 [PMID:29459879] Zhang Y, et al. DELLA proteins negatively regulate dark-induced senescence and chlorophyll degradation in Arabidopsis through interaction with the transcription factor WRKY6. Plant Cell Rep., 2018. 37(7): p. 981-992 [PMID:29574486] Felipo-Benavent A, et al. Regulation of xylem fiber differentiation by gibberellins through DELLA-KNAT1 interaction. Development, 2019. [PMID:30389856] Wright DA, et al. Recovery of YAC-end sequences through complementation of an Escherichia coli pyrF mutation. Nucleic Acids Res., 1997. 25(13): p. 2679-80 [PMID:9185581]