PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G001048_P02
Common NameLOC100192062, ZEAMMB73_443682
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family B3
Protein Properties Length: 411aa    MW: 44862.7 Da    PI: 10.4507
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G001048_P02genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B349.57.6e-16100194199
                        EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
                 B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                        ffkv+ p+ +++  rl++p  f ++ +++++++  ++l+ +sg++W+  l  +  s++   + +GWkeFv ++ L+ g f+vF++dg  +f 
  GRMZM2G001048_P02 100 FFKVFFPEQSTE--RLRIPPMFNQHLKEQQPTG-AVSLRGPSGNRWQAALASESESEAaWCFDQGWKEFVTDHSLRLGHFLVFTRDGPAQF- 187
                        889997766655..69******95555554444.8***************77555555799***********************7765555. PP

                        .EEEEE-S CS
                 B3  92 lvvkvfrk 99 
                          v vf++
  GRMZM2G001048_P02 188 -SVAVFSS 194
                        .8888875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.7E-1997195IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.94398195IPR003340B3 DNA binding domain
CDDcd100172.70E-1698193No hitNo description
SuperFamilySSF1019362.16E-1698195IPR015300DNA-binding pseudobarrel domain
PfamPF023624.5E-13100193IPR003340B3 DNA binding domain
SMARTSM010197.2E-13100195IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000037anatomyshoot apex
PO:0006310anatomytassel floret
PO:0006339anatomyjuvenile vascular leaf
PO:0006340anatomyadult vascular leaf
PO:0006341anatomyprimary shoot system
PO:0006354anatomyear floret
PO:0006505anatomycentral spike of ear inflorescence
PO:0008018anatomytransition vascular leaf
PO:0009001anatomyfruit
PO:0009009anatomyplant embryo
PO:0009025anatomyvascular leaf
PO:0009054anatomyinflorescence bract
PO:0009066anatomyanther
PO:0009074anatomystyle
PO:0009084anatomypericarp
PO:0009089anatomyendosperm
PO:0020040anatomyleaf base
PO:0020104anatomyleaf sheath
PO:0020126anatomytassel inflorescence
PO:0020127anatomyprimary root
PO:0020136anatomyear inflorescence
PO:0020142anatomystem internode
PO:0020148anatomyshoot apical meristem
PO:0025142anatomyleaf tip
PO:0025287anatomyseedling coleoptile
PO:0001007developmental stagepollen development stage
PO:0001009developmental stageD pollen mother cell meiosis stage
PO:0001052developmental stagevascular leaf expansion stage
PO:0001053developmental stagevascular leaf post-expansion stage
PO:0001083developmental stageinflorescence development stage
PO:0001094developmental stageplant embryo coleoptilar stage
PO:0001095developmental stageplant embryo true leaf formation stage
PO:0001180developmental stageplant proembryo stage
PO:0007001developmental stageearly whole plant fruit ripening stage
PO:0007003developmental stageIL.03 full inflorescence length reached stage
PO:0007006developmental stageIL.00 inflorescence just visible stage
PO:0007015developmental stageradicle emergence stage
PO:0007016developmental stagewhole plant flowering stage
PO:0007022developmental stageseed imbibition stage
PO:0007026developmental stageFL.00 first flower(s) open stage
PO:0007031developmental stagemid whole plant fruit ripening stage
PO:0007032developmental stagewhole plant fruit formation stage up to 10%
PO:0007045developmental stagecoleoptile emergence stage
PO:0007063developmental stageLP.07 seven leaves visible stage
PO:0007065developmental stageLP.05 five leaves visible stage
PO:0007072developmental stageLP.18 eighteen leaves visible stage
PO:0007094developmental stageLP.01 one leaf visible stage
PO:0007101developmental stageLP.09 nine leaves visible stage
PO:0007104developmental stageLP.15 fifteen leaves visible stage
PO:0007106developmental stageLP.03 three leaves visible stage
PO:0007112developmental stage1 main shoot growth stage
PO:0007116developmental stageLP.11 eleven leaves visible stage
PO:0007123developmental stageLP.06 six leaves visible stage
PO:0007633developmental stageendosperm development stage
PO:0021004developmental stageinflorescence initiation stage
Sequence ? help Back to Top
Protein Sequence    Length: 411 aa     Download sequence    Send to blast
MRGRKRQQVS ASSAAALVKG RESTKQKEKE ARKEKEAREA GREPAAKERQ MRRKAGKEKE  60
TETGGEGKEP AKEKEVREEG KENDKHKEKA KTKANVCPQF FKVFFPEQST ERLRIPPMFN  120
QHLKEQQPTG AVSLRGPSGN RWQAALASES ESEAAWCFDQ GWKEFVTDHS LRLGHFLVFT  180
RDGPAQFSVA VFSSSGVIDP AALDARPTAN GGAAVKLEDG EGVGVRGDVD AGGDTSSEVS  240
LLPAEEGDGG ATGRRTGATS GGAGGASEMS LVLREEGRGV TGKRARATTS DLPADASAPK  300
KHSALAKKAG KRRPQAATSK DVSMIVHNPT FSLLDESKTF NKTQIRDKNV PRSGKFLLRT  360
TKAPVVISQR RRVTEEEKCL ALRKAMEFKS KHPFTMQIMI ESYVYVGFFM V
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.1184530.0cell culture| ear| embryo| ovary
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G001048
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G001048_P02
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0343560.0BT034356.1 Zea mays full-length cDNA clone ZM_BFc0007A03 mRNA, complete cds.
GenBankBT0614710.0BT061471.1 Zea mays full-length cDNA clone ZM_BFb0150H17 mRNA, complete cds.
GenBankJX4284580.0JX428458.1 Zea mays subsp. mays clone pUT3053 ABI36 ABI3VP1 type transcription factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001130957.10.0B3 domain-containing protein REM16
TrEMBLB4FB680.0B4FB68_MAIZE; B3 domain-containing protein REM16
TrEMBLK0D9L30.0K0D9L3_MAIZE; ABI36 ABI3VP1 type transcription factor (Fragment)
STRINGGRMZM2G001048_P010.0(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66980.14e-14B3 family protein